GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 4V8U designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 4V8U_GDP_CY_702 | 87% | 28% | 0.069 | 0.941 | 1.35 | 1.55 | 3 | 7 | 10 | 0 | 100% | 1 |
| 4V8U_GDP_AY_702 | 66% | 33% | 0.095 | 0.898 | 1.19 | 1.44 | 2 | 4 | 13 | 0 | 100% | 1 |
| 4WQU_GDP_BZ_702 | 80% | 39% | 0.123 | 0.971 | 0.95 | 1.42 | - | 4 | 5 | 0 | 100% | 0.9925 |
| 1FNM_GDP_A_900 | 80% | 19% | 0.129 | 0.977 | 1.29 | 2.16 | 3 | 7 | 1 | 0 | 100% | 1 |
| 5HAU_GDP_1z_701 | 76% | 39% | 0.139 | 0.975 | 0.92 | 1.43 | 1 | 3 | 0 | 0 | 100% | 1 |
| 4WPO_GDP_BZ_702 | 75% | 37% | 0.135 | 0.969 | 1.03 | 1.42 | 1 | 5 | 6 | 0 | 100% | 0.9864 |
| 2EFG_GDP_A_900 | 72% | 28% | 0.155 | 0.981 | 1.68 | 1.2 | 5 | 3 | 1 | 0 | 100% | 1 |
| 1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
| 2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
| 4LUC_GDP_A_204 | 100% | 40% | 0.036 | 0.992 | 1.22 | 1.11 | 2 | 2 | 0 | 0 | 100% | 1 |
| 5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
| 5KY2_GDP_A_403 | 100% | 48% | 0.036 | 0.989 | 0.98 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |
