DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)
DGD is a Ligand Of Interest in 5B5E designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
5B5E_DGD_c_919 | 87% | 44% | 0.076 | 0.957 | 0.94 | 1.23 | 3 | 10 | 0 | 0 | 94% | 0.9394 |
5B5E_DGD_c_918 | 85% | 46% | 0.08 | 0.955 | 0.9 | 1.18 | 2 | 9 | 0 | 0 | 94% | 0.9394 |
5B5E_DGD_C_517 | 84% | 47% | 0.085 | 0.956 | 0.82 | 1.22 | 2 | 8 | 0 | 0 | 94% | 0.9394 |
5B5E_DGD_C_519 | 83% | 48% | 0.085 | 0.955 | 0.86 | 1.13 | 2 | 8 | 0 | 0 | 94% | 0.9394 |
5B5E_DGD_c_917 | 82% | 46% | 0.09 | 0.956 | 0.84 | 1.24 | 3 | 8 | 0 | 0 | 94% | 0.9394 |
5B5E_DGD_H_103 | 77% | 39% | 0.088 | 0.939 | 1.05 | 1.32 | 3 | 7 | 0 | 0 | 94% | 0.9394 |
5B5E_DGD_h_102 | 77% | 44% | 0.087 | 0.936 | 0.93 | 1.23 | 3 | 9 | 0 | 0 | 94% | 0.9394 |
5B5E_DGD_C_518 | 74% | 47% | 0.097 | 0.936 | 0.95 | 1.09 | 4 | 4 | 0 | 0 | 94% | 0.9394 |
5B5E_DGD_D_407 | 7% | 25% | 0.191 | 0.68 | 1.28 | 1.74 | 3 | 8 | 0 | 0 | 76% | 0.7576 |
5B5E_DGD_d_407 | 6% | 40% | 0.216 | 0.686 | 1.11 | 1.24 | 2 | 6 | 0 | 0 | 76% | 0.7576 |
5GTI_DGD_h_103 | 96% | 52% | 0.05 | 0.967 | 0.89 | 0.96 | 3 | 3 | 0 | 0 | 94% | 0.9394 |
5V2C_DGD_C_516 | 95% | 43% | 0.067 | 0.983 | 0.89 | 1.29 | 5 | 10 | 0 | 0 | 94% | 0.9394 |
5WS6_DGD_h_103 | 92% | 53% | 0.065 | 0.968 | 0.86 | 0.96 | 3 | 3 | 0 | 0 | 94% | 0.9394 |
7YQ7_DGD_C_518 | 87% | 51% | 0.084 | 0.967 | 0.83 | 1.07 | 3 | 5 | 0 | 0 | 94% | 0.9394 |
8IR5_DGD_C_515 | 86% | 47% | 0.092 | 0.97 | 0.81 | 1.21 | 2 | 8 | 0 | 0 | 94% | 0.9394 |