UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 5F87 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5F87_UDP_A_501 | 100% | 29% | 0.013 | 0.999 | 1.18 | 1.54 | 2 | 4 | 2 | 0 | 100% | 1 |
| 5F87_UDP_C_501 | 100% | 26% | 0.015 | 0.999 | 1.25 | 1.62 | 4 | 7 | 0 | 0 | 100% | 1 |
| 5F87_UDP_F_501 | 100% | 27% | 0.015 | 0.999 | 1.18 | 1.64 | 3 | 4 | 0 | 0 | 100% | 1 |
| 5F87_UDP_B_501 | 100% | 29% | 0.016 | 0.999 | 1.21 | 1.53 | 3 | 6 | 1 | 0 | 100% | 1 |
| 5F87_UDP_D_501 | 100% | 25% | 0.019 | 0.998 | 1.23 | 1.68 | 3 | 4 | 1 | 0 | 100% | 1 |
| 5F87_UDP_E_501 | 100% | 25% | 0.018 | 0.998 | 1.36 | 1.58 | 4 | 5 | 1 | 0 | 100% | 1 |
| 5F85_UDP_A_501 | 99% | 31% | 0.043 | 0.988 | 1.13 | 1.49 | 4 | 5 | 0 | 0 | 100% | 1 |
| 5F84_UDP_A_501 | 98% | 28% | 0.052 | 0.984 | 1.39 | 1.42 | 4 | 5 | 0 | 0 | 100% | 1 |
| 5V0T_UDP_B_501 | 100% | 69% | 0.014 | 0.999 | 0.43 | 0.61 | - | 1 | 0 | 0 | 100% | 1 |
| 7FGA_UDP_D_401 | 100% | 2% | 0.014 | 0.999 | 3.6 | 2.79 | 15 | 12 | 2 | 0 | 100% | 1 |
| 8X3Q_UDP_D_401 | 100% | 3% | 0.013 | 0.999 | 3.5 | 2.77 | 14 | 14 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.51 | 2.73 | 14 | 12 | 2 | 0 | 100% | 1 |
| 1GX4_UDP_A_401 | 100% | 30% | 0.015 | 0.998 | 1.75 | 0.97 | 4 | 2 | 0 | 0 | 100% | 1 |
