Ligand validation:5HKV

SPD: SPERMIDINE

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5HKV_SPD_X_3484	41%	90%	0.201	0.921	0.16	0.38	-	-	5	0	100%	1
5HKV_SPD_X_3485	30%	93%	0.24	0.91	0.19	0.25	-	-	1	0	100%	1
5HKV_SPD_X_3483	20%	83%	0.259	0.872	0.25	0.47	-	-	1	0	100%	1
5HKV_SPD_X_3487	10%	96%	0.31	0.838	0.11	0.24	-	-	0	0	100%	1
5HKV_SPD_X_3489	3%	95%	0.439	0.808	0.14	0.23	-	-	10	0	100%	1
5HKV_SPD_X_3486	2%	87%	0.612	0.9	0.29	0.35	-	-	1	0	100%	1
5HKV_SPD_Y_213	1%	91%	0.464	0.699	0.25	0.24	-	-	0	0	100%	1
5HKV_SPD_X_3488	1%	86%	0.595	0.834	0.26	0.39	-	-	1	0	100%	1
5HKV_SPD_X_3482	1%	95%	0.589	0.826	0.19	0.2	-	-	2	0	100%	1
3C6K_SPD_A_501	100%	52%	0.031	0.993	0.37	1.31	-	1	1	0	100%	1
9VYL_SPD_A_303	99%	15%	0.045	0.984	0.98	2.61	1	3	2	0	100%	1
4C0Z_SPD_A_1223	93%	59%	0.064	0.966	0.7	0.73	-	-	3	0	100%	1
5JC9_SPD_DA_3190	90%	97%	0.089	0.979	0.12	0.19	-	-	0	0	100%	1
7XJM_SPD_B_401	88%	89%	0.078	0.961	0.25	0.33	-	-	0	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.