VDM: (1S,2S,3R,6S)-4-(HYDROXYMETHYL)-6-{[(1S,2S,3S,4R,5R)-2,3,4-TRIHYDROXY-5-(HYDROXYMETHYL)CYCLOHEXYL]AMINO}CYCLOHEX-4-ENE-1,2,3-TRIOL
VDM is a Ligand Of Interest in 5HVO designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5HVO_VDM_B_502 | 82% | 10% | 0.068 | 0.927 | 1.58 | 2.6 | 4 | 8 | 1 | 0 | 100% | 1 |
| 5HVO_VDM_C_502 | 78% | 11% | 0.078 | 0.922 | 1.56 | 2.49 | 5 | 7 | 2 | 0 | 100% | 1 |
| 5HVO_VDM_D_502 | 70% | 11% | 0.086 | 0.904 | 1.53 | 2.47 | 4 | 9 | 1 | 0 | 100% | 1 |
| 5HVO_VDM_A_502 | 61% | 9% | 0.092 | 0.879 | 1.56 | 2.71 | 5 | 8 | 2 | 0 | 100% | 1 |
| 8Z2U_VDM_B_603 | 100% | 34% | 0.017 | 0.998 | 0.79 | 1.68 | 2 | 4 | 2 | 0 | 100% | 1 |
| 2JF4_VDM_A_1548 | 100% | 34% | 0.023 | 0.993 | 0.8 | 1.67 | - | 4 | 1 | 0 | 100% | 1 |
| 5Z66_VDM_A_609 | 98% | 32% | 0.041 | 0.976 | 0.96 | 1.62 | 2 | 1 | 1 | 0 | 100% | 1 |
| 8Z2T_VDM_A_603 | 90% | 24% | 0.069 | 0.958 | 0.56 | 2.36 | - | 6 | 3 | 0 | 100% | 1 |
| 5HVL_VDM_B_502 | 86% | 20% | 0.071 | 0.945 | 1.33 | 1.92 | 3 | 4 | 0 | 0 | 100% | 1 |
