GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 5IQF designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5IQF_GDP_A_500 | 89% | 34% | 0.106 | 0.987 | 0.9 | 1.7 | 1 | 8 | 0 | 0 | 100% | 1 |
| 5IQF_GDP_D_500 | 87% | 33% | 0.112 | 0.983 | 1.26 | 1.38 | 1 | 4 | 0 | 0 | 100% | 1 |
| 5IQF_GDP_C_500 | 73% | 38% | 0.158 | 0.985 | 1.17 | 1.26 | 1 | 5 | 0 | 0 | 100% | 1 |
| 5IQF_GDP_B_500 | 66% | 40% | 0.157 | 0.964 | 0.88 | 1.44 | - | 6 | 0 | 0 | 100% | 1 |
| 5IQG_GDP_D_500 | 78% | 49% | 0.143 | 0.987 | 1.04 | 0.94 | 3 | 2 | 1 | 0 | 100% | 1 |
| 4ORK_GDP_B_500 | 71% | 42% | 0.148 | 0.97 | 0.95 | 1.3 | - | 4 | 0 | 0 | 100% | 1 |
| 1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
| 2CXX_GDP_B_2401 | 100% | 29% | 0.031 | 0.989 | 1.26 | 1.57 | 1 | 3 | 0 | 0 | 100% | 1 |
| 4LUC_GDP_A_204 | 100% | 40% | 0.036 | 0.992 | 1.22 | 1.11 | 2 | 2 | 0 | 0 | 100% | 1 |
| 5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
| 5KY2_GDP_A_403 | 100% | 48% | 0.036 | 0.989 | 0.98 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |
