GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 5KY4 designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5KY4_GDP_A_403 | 93% | 25% | 0.046 | 0.983 | 1.26 | 1.81 | 5 | 8 | 0 | 0 | 100% | 1 |
| 5KY2_GDP_A_403 | 97% | 32% | 0.036 | 0.989 | 1.13 | 1.56 | 3 | 7 | 0 | 0 | 100% | 1 |
| 5KY0_GDP_A_403 | 95% | 27% | 0.04 | 0.986 | 1.3 | 1.66 | 5 | 9 | 0 | 0 | 100% | 1 |
| 5KXQ_GDP_D_403 | 95% | 30% | 0.041 | 0.986 | 1.11 | 1.7 | 1 | 7 | 0 | 0 | 100% | 1 |
| 5KXH_GDP_A_403 | 94% | 28% | 0.043 | 0.985 | 1.21 | 1.7 | 5 | 7 | 0 | 0 | 100% | 1 |
| 5KY5_GDP_A_403 | 80% | 29% | 0.067 | 0.964 | 1.18 | 1.68 | 3 | 8 | 0 | 0 | 100% | 1 |
| 1TVK_GDP_B_1500 | 100% | 34% | 0.012 | 0.999 | 1.95 | 0.71 | 1 | 1 | 8 | 0 | 100% | 1 |
| 6EG8_GDP_L_401 | 100% | 28% | 0.013 | 0.999 | 1.16 | 1.75 | 3 | 7 | 3 | 0 | 100% | 1 |
| 2CNW_GDP_F_1001 | 100% | 25% | 0.014 | 0.999 | 1.21 | 1.86 | 4 | 8 | 0 | 0 | 100% | 1 |
| 5V9L_GDP_B_201 | 100% | 35% | 0.013 | 0.998 | 0.98 | 1.53 | 1 | 7 | 0 | 0 | 100% | 1 |
| 3ZY3_GDP_A_1384 | 100% | 28% | 0.014 | 0.998 | 1.13 | 1.74 | 3 | 8 | 1 | 0 | 100% | 1 |
