5M3Z | pdb_00005m3z


PLP: PYRIDOXAL-5'-PHOSPHATE

PLP is a Ligand Of Interest in 5M3Z designated by the RCSB
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Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5M3Z_PLP_A_401Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5M3Z_PLP_A_401Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5M3Z_PLP_A_401Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
5M3Z_PLP_A_401 93% 17% 0.082 0.9762.08 1.54 4 410100%0.7
5K30_PLP_A_401 95% 22% 0.071 0.9752.18 1.12 5 210100%1
6S0C_PLP_A_402 90% 23% 0.087 0.972.08 1.12 4 210100%1
5E4Z_PLP_A_404 81% 21% 0.121 0.9752.26 1.1 6 200100%1
6EGR_PLP_A_400 80% 21% 0.105 0.9532.05 1.29 4 410100%1
5D5S_PLP_A_403 63% 10% 0.149 0.9452.98 1.33 3 100100%0.731
2BIE_PLP_A_1361 100% 38% 0.024 0.9961.23 1.19 1 310100%1
2X3L_PLP_A_1211 100% 19% 0.024 0.9951.74 1.73 2 210100%1
3CEJ_PLP_A_832 100% 41% 0.021 0.9981.23 1.05 1 280100%1
3CEM_PLP_A_832 100% 41% 0.021 0.9971.24 1.04 2 210100%1
4PPM_PLP_A_902 100% 7% 0.019 0.9982.88 1.91 9 600100%1