XYS: alpha-D-xylopyranose
XYS is a Ligand Of Interest in 5NH7 designated by the RCSB
| Best-fitted instance in this entry | |
| Other instances in this entry |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry | |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5NH7_XYS_C_505 | 74% | 51% | 0.082 | 0.913 | 0.84 | 0.95 | - | - | 1 | 0 | 100% | 1 |
| 5NH7_XYS_B_506 | 67% | 58% | 0.09 | 0.898 | 0.78 | 0.69 | - | - | 0 | 0 | 100% | 1 |
| 5NH7_XYS_B_505 | 59% | 53% | 0.099 | 0.878 | 0.63 | 1.03 | - | 1 | 0 | 0 | 100% | 1 |
| 5NH7_XYS_D_505 | 58% | 48% | 0.097 | 0.873 | 0.94 | 0.95 | 1 | - | 1 | 0 | 100% | 1 |
| 5NH7_XYS_D_506 | 53% | 53% | 0.102 | 0.862 | 0.92 | 0.77 | 1 | - | 0 | 0 | 100% | 1 |
| 5NH7_XYS_A_505 | 53% | 47% | 0.107 | 0.866 | 0.96 | 0.98 | - | - | 0 | 0 | 100% | 1 |
| 5NH7_XYS_B_507 | 32% | 46% | 0.126 | 0.798 | 0.52 | 1.43 | - | 2 | 0 | 0 | 100% | 1 |
| 5NH7_XYS_A_506 | 22% | 47% | 0.147 | 0.767 | 0.58 | 1.35 | - | 3 | 0 | 0 | 100% | 1 |
| 6T8E_XYS_C_505 | 99% | 36% | 0.036 | 0.985 | 1.11 | 1.3 | 1 | 2 | 0 | 0 | 100% | 1 |
| 5NHE_XYS_D_504 | 81% | 48% | 0.075 | 0.929 | 0.94 | 0.98 | - | 1 | 1 | 0 | 100% | 1 |
| 6T8F_XYS_C_505 | 73% | 35% | 0.085 | 0.914 | 1.22 | 1.24 | 1 | - | 0 | 0 | 100% | 1 |
| 5NHD_XYS_D_504 | 72% | 46% | 0.087 | 0.913 | 0.89 | 1.1 | - | - | 0 | 0 | 100% | 1 |
| 1W9T_XYS_B_1146 | 100% | 42% | 0.033 | 0.988 | 0.79 | 1.34 | - | 1 | 3 | 0 | 100% | 0.5 |
| 2CDC_XYS_D_1371 | 99% | 51% | 0.037 | 0.984 | 0.87 | 0.89 | 1 | - | 0 | 0 | 100% | 1 |
| 8OZ1_XYS_A_804 | 99% | 59% | 0.031 | 0.99 | 0.82 | 0.62 | - | - | 0 | 0 | 90% | 1 |
| 5L6G_XYS_A_512 | 99% | 62% | 0.042 | 0.981 | 0.45 | 0.84 | - | 1 | 0 | 0 | 100% | 1 |
| 7PLC_XYS_C_302 | 90% | 63% | 0.061 | 0.949 | 0.55 | 0.7 | - | - | 1 | 0 | 100% | 1 |














