5NXR


LDA: LAURYL DIMETHYLAMINE-N-OXIDE

LDA is a Ligand Of Interest in 5NXR designated by the RCSB
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Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5NXR_LDA_B_413Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5NXR_LDA_B_413Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5NXR_LDA_B_413Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
5NXR_LDA_B_413 48% 59% 0.164 0.9050.89 0.7 1 -10100%1
5NXR_LDA_C_401 43% 59% 0.169 0.8920.91 0.66 1 -10100%1
5NXR_LDA_C_403 40% 64% 0.193 0.9030.77 0.6 1 -00100%1
5NXR_LDA_A_410 38% 58% 0.179 0.8830.82 0.81 1 110100%1
5NXR_LDA_B_403 34% 64% 0.199 0.8820.95 0.46 1 -20100%1
5NXR_LDA_A_402 32% 54% 0.226 0.90.85 0.92 1 -00100%1
5NXR_LDA_B_404 31% 47% 0.212 0.881.13 0.93 1 -10100%1
5NXR_LDA_B_406 27% 12% 0.204 0.8530.85 3.18 1 300100%1
5NXR_LDA_B_405 24% 59% 0.242 0.8730.85 0.72 1 -30100%1
5NXR_LDA_B_408 24% 66% 0.193 0.8540.73 0.57 - -0081%1
5NXR_LDA_B_409 23% 59% 0.232 0.8540.84 0.72 - 100100%1
5NXR_LDA_C_414 22% 63% 0.223 0.8410.8 0.63 1 -10100%1
5NXR_LDA_C_417 19% 55% 0.262 0.8590.81 0.94 - 130100%1
5NXR_LDA_B_416 17% 64% 0.232 0.8130.87 0.53 1 -10100%1
5NXR_LDA_C_415 16% 63% 0.235 0.8060.78 0.65 1 -10100%1
5NXR_LDA_C_422 16% 13% 0.207 0.7750.72 3.21 - 300100%1
5NXR_LDA_B_414 14% 10% 0.298 0.8540.51 3.65 - 310100%1
5NXR_LDA_C_407 14% 64% 0.258 0.810.73 0.65 - -00100%1
5NXR_LDA_C_426 14% 57% 0.263 0.8150.85 0.81 1 -10100%1
5NXR_LDA_C_411 12% 60% 0.216 0.7470.91 0.64 1 -00100%1
5NXR_LDA_C_425 12% 58% 0.268 0.7950.87 0.75 1 110100%1
5NXR_LDA_C_404 11% 55% 0.279 0.8011 0.74 1 100100%1
5NXR_LDA_C_413 11% 60% 0.259 0.7750.81 0.73 1 120100%1
5NXR_LDA_C_418 11% 55% 0.257 0.7711.18 0.57 1 -00100%1
5NXR_LDA_C_405 11% 47% 0.268 0.8151.13 0.94 1 12081%1
5NXR_LDA_C_402 10% 49% 0.226 0.7911.11 0.88 1 10063%1
5NXR_LDA_C_427 9% 57% 0.25 0.780.93 0.72 1 -0081%1
5NXR_LDA_C_416 9% 50% 0.264 0.8250.98 0.95 - -2063%1
5NXR_LDA_C_439 7% 8% 0.27 0.7810.68 3.83 - 30069%1
5NXR_LDA_A_403 7% 60% 0.363 0.8120.9 0.64 1 -20100%1
5NXR_LDA_C_429 6% 68% 0.327 0.7780.8 0.46 1 -1094%1
5NXR_LDA_C_423 5% 58% 0.306 0.7180.97 0.64 1 -00100%1
5NXR_LDA_C_437 5% 57% 0.257 0.7381.05 0.62 1 -0056%1
5NXR_LDA_B_415 5% 65% 0.392 0.7930.84 0.53 1 -00100%1
5NXR_LDA_B_411 4% 68% 0.41 0.7990.78 0.46 1 -20100%1
5NXR_LDA_B_402 4% 70% 0.357 0.740.75 0.41 1 -10100%1
5NXR_LDA_C_412 4% 54% 0.299 0.670.94 0.84 1 120100%1
5NXR_LDA_B_401 3% 64% 0.402 0.7580.75 0.63 1 -00100%1
5NXR_LDA_C_430 3% 61% 0.365 0.7090.89 0.61 1 -00100%1
5NXR_LDA_C_408 3% 14% 0.335 0.6650.69 3.08 - 320100%1
5NXR_LDA_C_419 3% 60% 0.384 0.7070.67 0.87 - 130100%1
5NXR_LDA_C_406 3% 60% 0.344 0.6590.91 0.63 1 -10100%1
5NXR_LDA_A_404 2% 56% 0.339 0.6850.98 0.73 1 -0075%1
5NXR_LDA_A_413 2% 9% 0.385 0.7350.72 3.62 - 32069%1
5NXR_LDA_C_441 2% 79% 0.378 0.7290.47 0.39 - -0056%1
5NXR_LDA_C_420 2% 49% 0.357 0.6171.27 0.73 1 -30100%1
5NXR_LDA_B_410 1% 64% 0.416 0.6410.66 0.71 - -00100%1
5NXR_LDA_A_405 1% 56% 0.437 0.6620.67 1.01 - 100100%1
5NXR_LDA_A_406 1% 12% 0.467 0.6730.73 3.28 - 310100%1
5NXR_LDA_B_412 1% 52% 0.34 0.504 0.73 1.11 - 100100%1
5NXR_LDA_A_412 1% 3% 0.507 0.7571.05 5.09 1 32050%1
5NXR_LDA_A_401 1% 60% 0.448 0.5960.85 0.67 1 -00100%1
5NXR_LDA_B_417 1% 10% 0.421 0.552 0.8 3.4 1 310100%1
5NXR_LDA_C_421 1% 59% 0.425 0.526 0.85 0.74 1 -00100%1
5NXR_LDA_C_428 1% 13% 0.614 0.7160.71 3.23 - 300100%1
5NXR_LDA_A_408 1% 57% 0.515 0.6420.86 0.79 1 -1075%1
5NXR_LDA_A_409 1% 64% 0.395 0.534 0.94 0.45 - -2063%1
5NXR_LDA_C_433 0% 77% 0.456 0.567 0.42 0.49 - -0069%1
5NXR_LDA_C_410 0% 59% 0.43 0.525 0.96 0.61 1 -2069%1
5NXR_LDA_A_411 0% 55% 0.573 0.6050.62 1.12 - 100100%1
5NXR_LDA_C_440 0% 79% 0.464 0.532 0.53 0.34 - -0056%1
5NXR_LDA_C_432 0% 66% 0.437 0.363 0.71 0.6 - -10100%1
5NXR_LDA_B_407 0% 12% 0.628 0.488 0.68 3.29 - 300100%1
5NXR_LDA_C_442 0% 80% 0.444 0.35 0.59 0.26 - -0056%1
5NXR_LDA_A_407 0% 9% 0.64 0.504 0.83 3.63 - 30081%1
5NXR_LDA_C_436 0% 77% 0.538 0.358 0.47 0.44 - -0075%1
5NXR_LDA_C_438 0% 8% 0.57 0.415 0.96 3.68 - 30069%1
5NXR_LDA_C_431 0% 61% 0.475 0.241 0.68 0.82 - 100100%1
5NXR_LDA_C_424 0% 54% 0.72 0.4 0.94 0.84 - -0056%1
5NXR_LDA_C_435 0% 13% 0.773 0.331 0.77 3.12 - 300100%1
5NXR_LDA_C_434 0% 78% 0.692 0.33 0.43 0.45 - -0063%1
5NXR_LDA_C_409 0% 63% 0.684 0.2 0.82 0.61 1 -00100%1
5NXU_LDA_C_404 34% 11% 0.239 0.9231.1 3.03 1 310100%1
2VQI_LDA_B_1639 100% 35% 0.04 0.9952.08 0.52 1 -30100%1
6PRC_LDA_H_701 97% 23% 0.047 0.9592.52 0.69 2 -00100%1
3PRC_LDA_H_701 95% 24% 0.049 0.9542.42 0.76 2 -00100%1
2PRC_LDA_M_701 95% 25% 0.048 0.952.43 0.69 2 -00100%1
5PRC_LDA_H_701 95% 20% 0.052 0.9542.65 0.78 2 100100%1