Ligand validation:5VDP

1SY: cGAMP

1SY is a Ligand Of Interest in 5VDP designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5VDP_1SY_B_604	92%	18%	0.065	0.953	2.19	1.34	16	3	1	0	100%	1
5VDP_1SY_A_605	87%	17%	0.069	0.941	2.24	1.38	17	6	0	0	100%	1
4O67_1SY_A_601	87%	20%	0.1	0.971	1.75	1.66	8	6	0	0	100%	1
7FTG_1SY_A_601	81%	12%	0.083	0.934	2.5	1.56	16	8	0	0	100%	1
7FTH_1SY_A_601	78%	11%	0.125	0.969	2.47	1.7	13	9	0	0	100%	1
6MJX_1SY_A_601	46%	13%	0.166	0.903	2.19	1.83	17	10	0	0	100%	1
8SI0_1SY_A_601	45%	8%	0.167	0.9	2.38	2.19	17	10	0	0	100%	1
8KBH_1SY_B_401	90%	57%	0.089	0.973	0.7	0.93	1	1	0	0	100%	1
4LOJ_1SY_B_401	88%	2%	0.085	0.961	4.08	2.56	25	21	4	0	100%	0.5
6A06_1SY_B_403	86%	17%	0.096	0.966	2.06	1.59	17	4	1	0	100%	1
8KBG_1SY_H_401	83%	56%	0.117	0.977	0.69	0.99	-	3	0	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.