Ligand validation:5Y17

HDD: CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE

HDD is a Ligand Of Interest in 5Y17 designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5Y17_HDD_B_701	85%	8%	0.114	0.981	1.92	2.63	9	12	0	0	100%	1
5Y17_HDD_C_701	84%	8%	0.117	0.98	2.14	2.41	11	13	0	0	100%	1
5Y17_HDD_D_701	83%	6%	0.119	0.977	1.87	3.1	10	12	1	0	100%	1
5Y17_HDD_A_701	81%	11%	0.127	0.979	1.87	2.32	12	12	1	0	100%	1
5XY4_HDD_C_701	99%	7%	0.057	0.989	1.9	2.83	12	16	2	0	100%	1
5XZM_HDD_B_701	99%	24%	0.059	0.991	1.4	1.72	5	10	0	0	100%	1
7VN0_HDD_C_701	99%	25%	0.062	0.991	1.21	1.81	4	9	0	0	100%	1
5XVZ_HDD_B_701	97%	4%	0.066	0.983	1.83	3.87	11	15	0	0	100%	1
5XZN_HDD_B_701	97%	13%	0.071	0.988	1.58	2.38	12	12	0	0	100%	1
3P9Q_HDD_D_760	100%	4%	0.039	0.991	2.45	3.13	13	15	10	0	100%	0.5
5BV2_HDD_P_801	100%	11%	0.052	0.995	1.59	2.59	6	11	6	0	100%	1
3P9P_HDD_A_760	99%	8%	0.06	0.991	2.39	2.33	11	9	2	0	100%	0.25
3PQ8_HDD_D_760	99%	7%	0.059	0.989	2.37	2.39	10	11	9	0	100%	0.5

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.