5YPI | pdb_00005ypi


8YF: (2R)-2-[(2S,3R)-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-(2-methanimidamidoethylsulfanyl)-2,3-dihydro-1H-pyrrole -5-carboxylic acid

8YF is a Ligand Of Interest in 5YPI designated by the Author
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Best-fitted instance in this entry
Other instances in this entry
Best-fitted instance in this entry
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
5YPI_8YF_F_303 100% 5% 0.026 0.9953.99 1.37 3 200100%0.85
5YPI_8YF_B_303 100% 4% 0.031 0.9934.13 1.37 3 200100%0.99
5YPI_8YF_E_303 100% 4% 0.03 0.9914.05 1.52 3 200100%0.96
5YPI_8YF_C_303 100% 5% 0.033 0.9944.04 1.25 3 100100%0.88
5YPI_8YF_A_303 100% 5% 0.035 0.9924.05 1.24 3 100100%0.89
5YPI_8YF_H_303 100% 4% 0.034 0.9914.06 1.52 3 310100%0.98
5YPI_8YF_D_303 100% 5% 0.036 0.9924.05 1.42 3 200100%0.87
5YPI_8YF_G_303 99% 4% 0.037 0.9884.11 1.68 3 300100%0.88
7LNL_8YF_A_301 96% 5% 0.06 0.983.55 1.69 7 410100%1
6RZR_8YF_A_311 73% 36% 0.105 0.9350.87 1.51 - 100100%1
7LR9_8YF_A_301 57% 5% 0.122 0.8973.55 1.69 7 410100%1
8QNZ_8YF_AAA_301 34% 34% 0.174 0.8611.03 1.48 1 210100%0.61
6XJ8_8YF_A_301 20% 12% 0.165 0.7672.24 1.75 3 300100%0.79