5Z2P | pdb_00005z2p


TD6: (4S)-4-{3-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-(2-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}ethyl)-4-methyl-1,3lambda~5~-thiazol-2-yl}-4-hydroxybutanoic acid

TD6 is a Ligand Of Interest in 5Z2P designated by the RCSB
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Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5Z2P_TD6_F_601Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5Z2P_TD6_F_601Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
5Z2P_TD6_F_601 90% 3% 0.095 0.9763.93 2.06 13 1590100%0.957
5Z2P_TD6_E_601 89% 5% 0.093 0.9723.74 1.8 11 1160100%1
5Z2P_TD6_H_601 89% 4% 0.093 0.9723.75 1.94 12 1140100%0.973
5Z2P_TD6_B_601 88% 4% 0.097 0.9714.13 1.46 12 7100100%0.97
5Z2P_TD6_D_601 86% 4% 0.103 0.9723.88 1.9 13 9120100%0.963
5Z2P_TD6_A_601 86% 3% 0.106 0.9743.87 2.27 14 11130100%0.928
5Z2P_TD6_C_601 85% 3% 0.104 0.9693.82 2.17 13 990100%0.943
5Z2P_TD6_G_601 76% 4% 0.121 0.9593.49 2.31 12 12140100%0.969
5EJ8_TD6_C_602 99% 15% 0.058 0.9911.92 1.87 5 950100%1
5EJ7_TD6_F_601 97% 11% 0.065 0.982.5 1.67 5 790100%1
5EJ6_TD6_H_601 96% 7% 0.07 0.982.99 1.85 5 890100%1
5EJ4_TD6_B_602 95% 8% 0.075 0.982.79 1.8 5 1050100%1
5EJA_TD6_F_601 84% 7% 0.098 0.9612.83 2.05 5 950100%1