5G2Q
PDA: 2-[(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL)-AMINO]-PROPIONIC ACID
PDA is a Ligand Of Interest in 5G2Q designated by the RCSB
Best-fitted instance in this entry | |
Other instances in this entry |
Best-fitted instance in this entry | |
Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
---|---|---|---|---|---|---|---|---|---|---|---|---|
5G2Q_PDA_H_1000 | 74% | 11% | 0.14 | 0.972 | 2.56 | 1.68 | 2 | 4 | 0 | 0 | 100% | 1 |
5G2Q_PDA_F_1000 | 66% | 13% | 0.157 | 0.964 | 2.6 | 1.44 | 2 | 2 | 4 | 0 | 100% | 1 |
5G2Q_PDA_C_1000 | 62% | 15% | 0.163 | 0.957 | 2.38 | 1.43 | 3 | 4 | 3 | 0 | 100% | 1 |
5G2Q_PDA_B_1000 | 62% | 15% | 0.185 | 0.978 | 2.22 | 1.59 | 3 | 7 | 3 | 0 | 100% | 1 |
5G2Q_PDA_A_1000 | 61% | 17% | 0.179 | 0.968 | 2.34 | 1.32 | 2 | 3 | 2 | 0 | 100% | 1 |
5G2Q_PDA_E_1000 | 60% | 14% | 0.17 | 0.955 | 2.47 | 1.43 | 2 | 3 | 0 | 0 | 100% | 1 |
5G2Q_PDA_G_1000 | 59% | 15% | 0.19 | 0.974 | 2.27 | 1.51 | 3 | 5 | 0 | 0 | 100% | 1 |
5G2Q_PDA_I_1000 | 58% | 12% | 0.174 | 0.955 | 2.4 | 1.64 | 2 | 6 | 2 | 0 | 100% | 1 |
5G2Q_PDA_D_1000 | 54% | 14% | 0.199 | 0.965 | 2.21 | 1.69 | 3 | 6 | 3 | 0 | 100% | 1 |
5G2Q_PDA_K_1000 | 41% | 16% | 0.216 | 0.932 | 2.29 | 1.43 | 2 | 4 | 2 | 0 | 100% | 1 |
5G2Q_PDA_J_1000 | 35% | 18% | 0.223 | 0.913 | 2.3 | 1.27 | 2 | 1 | 1 | 0 | 100% | 1 |
5G2Q_PDA_L_1000 | 34% | 12% | 0.239 | 0.925 | 2.63 | 1.53 | 3 | 4 | 0 | 0 | 100% | 1 |
8H21_PDA_A_407 | 87% | 12% | 0.093 | 0.966 | 2.19 | 1.89 | 3 | 3 | 1 | 0 | 100% | 1 |
1ELU_PDA_A_400 | 72% | 1% | 0.122 | 0.946 | 4.9 | 2.99 | 11 | 12 | 6 | 1 | 100% | 1 |
2Q3D_PDA_A_311 | 68% | 20% | 0.17 | 0.982 | 1.73 | 1.64 | 3 | 3 | 1 | 1 | 100% | 1 |
6KG1_PDA_A_503 | 42% | 2% | 0.251 | 0.971 | 3.64 | 2.91 | 6 | 9 | 8 | 0 | 100% | 1 |
5XT6_PDA_B_501 | 34% | 10% | 0.246 | 0.931 | 3.09 | 1.31 | 3 | 5 | 3 | 0 | 100% | 1 |