7L3M | pdb_00007l3m


GDP: GUANOSINE-5'-DIPHOSPHATE

GDP is a Ligand Of Interest in 7L3M designated by the Author


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter7L3M_GDP_A_704Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter7L3M_GDP_A_704Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter7L3M_GDP_A_704Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
7L3M_GDP_A_704 84% 38% 0.099 0.960.79 1.62 - 800100%1
3DTB_GDP_A_800 98% 50% 0.058 0.9840.85 1.06 1 200100%0.8
2QF2_GDP_A_702 90% 49% 0.082 0.9660.9 1.06 - 300100%0.7
5FH5_GDP_A_703 90% 45% 0.088 0.9720.9 1.22 1 200100%1
9EIY_GDP_A_705 89% 46% 0.064 0.9411 1.1 1 100100%1
3MOH_GDP_A_1000 88% 25% 0.09 0.9671.2 1.84 1 800100%1
1TVK_GDP_B_1500 100% 23% 0.012 0.9992.28 0.95 3 280100%1
8QEG_GDP_A_401 100% 51% 0.031 0.9931.02 0.87 3 100100%1
8QEH_GDP_A_405 100% 55% 0.03 0.9930.89 0.85 1 100100%1
9BAJ_GDP_A_203 100% 41% 0.032 0.9941.22 1.1 2 210100%1
1RRG_GDP_A_183 100% 17% 0.036 0.9972.05 1.56 7 300100%1