PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE

PGV is a Ligand Of Interest in 7XMA designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter7XMA_PGV_N_607Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter7XMA_PGV_N_607Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter7XMA_PGV_N_607Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
7XMA_PGV_N_607 31% 47% 0.229 0.9010.94 1.1 2 370100%1
7XMA_PGV_A_607 22% 47% 0.263 0.8830.94 1.11 2 370100%1
7XMA_PGV_P_303 20% 79% 0.288 0.8950.33 0.53 - -30100%1
7XMA_PGV_C_301 17% 79% 0.313 0.8920.37 0.49 - 130100%1
7XMA_PGV_C_305 10% 40% 0.299 0.80.96 1.37 2 810100%1
7XMA_PGV_D_201 8% 89% 0.299 0.7730.32 0.33 - -120100%1
7XMA_PGV_N_609 4% 40% 0.356 0.7391 1.31 2 7120100%1
7XMA_PGV_P_302 3% 40% 0.323 0.6610.98 1.35 2 840100%1
5B1A_PGV_P_303 98% 35% 0.064 0.9851.06 1.51 3 1380100%1
5X1B_PGV_C_302 95% 52% 0.078 0.9810.92 0.93 2 400100%1
5B1B_PGV_C_302 94% 56% 0.078 0.9790.81 0.87 1 130100%1
7YPY_PGV_P_302 94% 54% 0.079 0.9780.79 0.99 2 210100%1
5ZCQ_PGV_N_608 90% 32% 0.094 0.9781.15 1.53 5 810100%1
7VUW_PGV_A_608 90% 48% 0.096 0.9790.89 1.12 2 310100%1