RCSB PDB: Search

232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

QUERY: Structure Author = "Acharya, P."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Search Summary

This query matches 189 Structures.

AllSelected

Explore in 3D

1Y5Y	Download File View File

Structure of the tetrahydromethanopterin dependent formaldehyde-activating enzyme (Fae) from Methylobacterium extorquens AM1

Acharya, P., Goenrich, M., Hagemeier, C.H., Demmer, U., Vorholt, J.A., Thauer, R.K., Ermler, U.

(2005) J Biol Chem 280: 13712-13719

Released	2005-01-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methylorubrum extorquens AM1
Macromolecule	Formaldehyde-activating enzyme fae (protein)
Unique Ligands	CA, NA

Explore in 3D

1Y60	Download File View File

Structure of the tetrahydromethanopterin dependent formaldehyde-activating enzyme (Fae) from Methylobacterium extorquens AM1 with bound 5,10-methylene tetrahydromethanopterin

Acharya, P., Goenrich, M., Hagemeier, C.H., Demmer, U., Vorholt, J.A., Thauer, R.K., Ermler, U.

(2005) J Biol Chem 280: 13712-13719

Released	2005-01-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Methylorubrum extorquens AM1
Macromolecule	Formaldehyde-activating enzyme fae (protein)
Unique Ligands	H4M

Explore in 3D

2FHJ	Download File View File

Crystal structure of formylmethanofuran: tetrahydromethanopterin formyltransferase in complex with its coenzymes

Acharya, P., Warkentin, E., Thauer, R.K., Shima, S., Ermler, U.

(2006) J Mol Biol 357: 870-879

Released	2006-03-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanopyrus kandleri
Macromolecule	Formylmethanofuran--tetrahydromethanopterin formyltransferase (protein)
Unique Ligands	H4Z, K, MFN, PE3, PE4

Explore in 3D

2FHK	Download File View File

Crystal structure of formylmethanofuran: tetrahydromethanopterin formyltransferase in complex with its coenzymes

Acharya, P., Warkentin, E., Thauer, R.K., Shima, S., Ermler, U.

(2006) J Mol Biol 357: 870-879

Released	2006-03-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanopyrus kandleri
Macromolecule	Formylmethanofuran--tetrahydromethanopterin formyltransferase (protein)
Unique Ligands	K, MFN

Explore in 3D

4H8W	Download File View File

Crystal structure of non-neutralizing and ADCC-potent antibody N5-i5 in complex with HIV-1 clade A/E gp120 and sCD4.

Tolbert, W.D., Acharya, P., Kwong, P.D., Pazgier, M.

(2014) J Virol 88: 12895-12906

Released	2014-04-09
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	FAB HEAVY CHAIN OF ADCC AND NON-NEUTRALIZING ANTI-HIV-1 ANTIBODY N5-I5 (protein) FAB LIGHT CHAIN OF ADCC AND NON-NEUTRALIZING ANTI-HIV-1 ANTIBODY N5-I5 (protein) HIV-1 CLADE A/E 93TH057 (H375S) GP120 (protein) T-cell surface glycoprotein CD4 (protein)
Unique Ligands	GOL, MRD, NAG

Explore in 3D

4JPW	Download File View File

Crystal structure of broadly and potently neutralizing antibody 12a21 in complex with hiv-1 strain 93th057 gp120 mutant

Acharya, P., Luongo, T., Zhou, T., Kwong, P.D.

(2013) Cell 153: 126-138

Released	2013-04-17
Method	X-RAY DIFFRACTION 2.904 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	HEAVY CHAIN OF ANTIBODY 12A21 (protein) HIV-1 CLADE A/E STRAIN 73TH057 GP120 WITH MUTATION H375S (protein) LIGHT CHAIN OF ANTIBODY 12A21 (protein)
Unique Ligands	EPE, NAG

Explore in 3D

4JZW	Download File View File

Crystal structure of CD4-mimetic miniprotein M48U1 in complex with HIV-1 YU2 gp120 in P212121 space group

Acharya, P., Kwong, P.D.

(2013) Structure 21: 1018-1029

Released	2013-06-12
Method	X-RAY DIFFRACTION 1.784 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	CD4-MIMETIC MINIPROTEIN M48U1 (protein) HIV-1 YU2 gp120 glycoprotein (protein)
Unique Ligands	EDO, IPA, NAG, SO4

Explore in 3D

4JZZ	Download File View File

Crystal structure of CD4-mimetic miniprotein M48U1 in complex with HIV-1 YU2 gp120 in C2221 space group

Acharya, P., Kwong, P.D.

(2013) Structure 21: 1018-1029

Released	2013-06-12
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	CD4-MIMETIC MINIPROTEIN M48U1 (protein) HIV-1 YU2 gp120 glycoprotein (protein)
Unique Ligands	FLC, IPA, NA, NAG

Explore in 3D

4K0A	Download File View File

Crystal structure of CD4-mimetic miniprotein M48U7 in complex with HIV-1 YU2 gp120

Acharya, P., Kwong, P.D.

(2013) Structure 21: 1018-1029

Released	2013-06-12
Method	X-RAY DIFFRACTION 2.13 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	CD4-MIMETIC MINIPROTEIN M48U7 (protein) HIV-1 YU2 gp120 glycoprotein (protein)
Unique Ligands	FLC, IPA, NAG

Explore in 3D

4KA2	Download File View File

Crystal structure of CD4-mimetic miniprotein M48U12 in complex with HIV-1 YU2 gp120

Acharya, P., Kwong, P.D.

(2013) J Med Chem 56: 5033-5047

Released	2013-06-19
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 YU2 gp120 (protein) M48U12 (protein)
Unique Ligands	NAG

Explore in 3D

4LAJ	Download File View File

Crystal structure of HIV-1 YU2 envelope gp120 glycoprotein in complex with CD4-mimetic miniprotein, M48U1, and llama single-domain, broadly neutralizing, co-receptor binding site antibody, JM4

Acharya, P., Luongo, T.S., Kwong, P.D.

(2013) J Virol 87: 10173-10181

Released	2013-08-14
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Human immunodeficiency virus 1 Lama glama
Macromolecule	CD4-mimetic miniprotein M48U1 (protein) HIV-1 YU2 gp120 envelope glycoprotein (protein) Llama single domain antibody, JM4 (protein)
Unique Ligands	ACA, EDO, NAG

Explore in 3D

4R4B	Download File View File

Crystal structure of the anti-hiv-1 antibody 2.2c

McLellan, J.S., Acharya, P., Huang, C.-C., Robinson, J., Kwong, P.D.

(2014) J Virol 88: 12895-12906

Released	2014-09-10
Method	X-RAY DIFFRACTION 2.199 Å
Organisms	Homo sapiens
Macromolecule	FAB 2.2C HEAVY CHAIN (protein) FAB 2.2C LIGHT CHAIN (protein)
Unique Ligands	NAG, SO4

Explore in 3D

4R4F	Download File View File

Crystal structure of non-neutralizing, A32-like antibody 2.2c in complex with HIV-1 YU2 gp120

Acharya, P., Kwong, P.D.

(2014) J Virol 88: 12895-12906

Released	2014-09-17
Method	X-RAY DIFFRACTION 3.514 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Antibody 2.2c LIGHT CHAIN (protein) Antibody 2.2c heavy CHAIN (protein) HIV-1 Env gp120 (protein) M48U1 peptide (protein)
Unique Ligands	BU3, NAG, SO4

Explore in 3D

4R4H	Download File View File

Crystal structure of non-neutralizing, A32-like antibody 2.2c in complex with HIV-1 Env gp120

Mclellan, J., Acharya, P., Huang, C.-C., Kwong, P.D.

(2014) J Virol 88: 12895-12906

Released	2014-09-17
Method	X-RAY DIFFRACTION 4.28 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Antibody 2.2c, Heavy chain (protein) Antibody 2.2c, Light chain (protein) HIV-1 Env gp120 (protein) T-cell surface glycoprotein CD4 (protein)
Unique Ligands	NAG

Explore in 3D

4R4N	Download File View File

Crystal structure of the anti-hiv-1 antibody 2.2c in complex with hiv-1 93ug037 gp120

Acharya, P., Louder, R., Kwong, P.D.

(2014) J Virol 88: 12895-12906

Released	2014-11-05
Method	X-RAY DIFFRACTION 3.56 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 synthetic construct
Macromolecule	Antibody 2.2c LIGHT CHAIN (protein) Antibody 2.2c heavy CHAIN (protein) HIV-1 gp120 (protein) M48U1 peptide (protein)
Unique Ligands	NAG

Explore in 3D

4RWY	Download File View File

Crystal structure of VH1-46 germline-derived CD4-binding site-directed antibody 8ANC131 in complex with HIV-1 clade B YU2 gp120

Acharya, P., Luongo, T.S., Kwong, P.D.

(2015) Cell 161: 1280-1292

Released	2015-07-01
Method	X-RAY DIFFRACTION 2.128 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Antibody 8ANC131 Heavy chain (protein) Antibody 8ANC131 Light chain (protein) HIV-1 YU2 gp120 (protein)
Unique Ligands	EDO, EPE, NA, NAG

Explore in 3D

4RX4	Download File View File

Crystal structure of VH1-46 germline-derived CD4-binding site-directed antibody 8ANC134 in complex with HIV-1 clade A Q842.d12 gp120

Zhou, T., Acharya, P., Moquin, S., Kwong, P.D.

(2015) Cell 161: 1280-1292

Released	2015-07-01
Method	X-RAY DIFFRACTION 3.45 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	8ANC134 Heavy chain (protein) 8ANC134 Light Chain (protein) HIV-1 Clade A Q842.d12 gp120 (protein)
Unique Ligands	EDO, NAG, SO4

Explore in 3D

4YFL	Download File View File

Crystal structure of VH1-46 germline-derived CD4-binding site-directed antibody 1B2530 in complex with HIV-1 clade A/E 93TH057 gp120

Acharya, P., Zhou, T., Moquin, S., Kwong, P.D.

(2015) Cell 161: 1280-1292

Released	2015-06-03
Method	X-RAY DIFFRACTION 3.387 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	1B2530 Light chain (protein) 1B2530 heavy chain (protein) Envelope glycoprotein gp160,Envelope glycoprotein gp160,Envelope glycoprotein gp160 (protein)
Unique Ligands	NAG

Explore in 3D

5U1F	Download File View File

Initial contact of HIV-1 Env with CD4: Cryo-EM structure of BG505 DS-SOSIP trimer in complex with CD4 and antibody PGT145

Acharya, P., Kwong, P.D., Potter, C.S., Carragher, B.

(2017) Nat Struct Mol Biol 24: 370-378

Released	2017-02-22
Method	ELECTRON MICROSCOPY 6.8 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	BG505 DS-SOSIP gp120 (protein) BG505 SOSIP gp41 (protein) PGT145 heavy chain (protein) PGT145 light chain (protein) T-cell surface glycoprotein CD4 (protein)

Explore in 3D

6CDE	Download File View File

Cryo-EM structure at 3.8 A resolution of vaccine-elicited antibody vFP20.01 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122

Acharya, P., Xu, K., Liu, K., Carragher, B., Potter, C.S., Kwong, P.D.

(2018) Nat Med 24: 857-867

Released	2018-05-16
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Unique protein chains: 8
Unique Ligands	MAN, NAG
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

6CDI	Download File View File

Cryo-EM structure at 3.6 A resolution of vaccine-elicited antibody vFP16.02 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122

Acharya, P., Xu, K., Liu, K., Carragher, B., Potter, C.S., Kwong, P.D.

(2018) Nat Med 24: 857-867

Released	2018-05-16
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Unique protein chains: 8
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

6CUE	Download File View File

Cryo-EM structure at 4.0 A resolution of vaccine-elicited antibody vFP7.04 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122

Acharya, P., Carragher, B., Potter, C.S., Kwong, P.D.

(2018) PLoS Pathog 14: e1007159-e1007159

Released	2018-07-11
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Mus musculus
Macromolecule	Unique protein chains: 8
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

6CUF	Download File View File

Cryo-EM structure at 4.2 A resolution of vaccine-elicited antibody vFP1.01 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122

Acharya, P., Carragher, B., Potter, C.S., Kwong, P.D.

(2018) PLoS Pathog 14: e1007159-e1007159

Released	2018-07-25
Method	ELECTRON MICROSCOPY 4 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 Mus musculus
Macromolecule	Unique protein chains: 8
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

6E5P	Download File View File

Backbone model based on cryo-EM map at 8.5 A of domain-swapped, glycan-reactive, neutralizing antibody 2G12 bound to HIV-1 Env BG505 DS-SOSIP, which was also bound to CD4-binding site antibody VRC03

Acharya, P., Kwong, P.D.

(2019) Structure 27: 196-206.e6

Released	2019-02-13
Method	ELECTRON MICROSCOPY 8.8 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	Unique protein chains: 6
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

6MJZ	Download File View File

Cryo-EM structure of Human Parainfluenza Virus Type 3 (hPIV3) in complex with antibody PIA174

Acharya, P., Stewart-Jones, G., Carragher, B., Potter, C.S., Kwong, P.D.

(2018) Proc Natl Acad Sci U S A 115: 12265-12270

Released	2018-11-14
Method	ELECTRON MICROSCOPY 4.3 Å
Organisms	Homo sapiens Human respirovirus 3
Macromolecule	Fusion glycoprotein F0 (protein) PIA174 Fab Heavy chain (protein) PIA174 Fab Light chain (protein)