RCSB PDB: Search

Dong, X., Bessho, Y., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

1VS3	Download File View File

Crystal Structure of the tRNA Pseudouridine Synthase TruA From Thermus thermophilus HB8

(2006) RNA Biol 3: 115-122

Released	2006-12-12
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Thermus thermophilus HB8
Macromolecule	tRNA pseudouridine synthase A (protein)

1WQL	Download File View File

Cumene dioxygenase (cumA1A2) from Pseudomonas fluorescens IP01

Dong, X., Fushinobu, S., Fukuda, E., Terada, T., Nakamura, S., Shimizu, K., Nojiri, H., Omori, T., Shoun, H., Wakagi, T.

(2005) J Bacteriol 187: 2483-2490

Released	2005-03-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Pseudomonas fluorescens
Macromolecule	ethylbenzene dioxygenase small subunit (protein) iron-sulfur protein large subunit of cumene dioxygenase (protein)
Unique Ligands	FE2, FES, OXY

1Z9M	Download File View File

Crystal Structure of Nectin-like molecule-1 protein Domain 1

Dong, X., Xu, F., Gong, Y., Gao, J., Lin, P., Chen, T., Peng, Y., Qiang, B., Yuan, J., Peng, X., Rao, Z.

(2006) J Biol Chem 281: 10610-10617

Released	2006-02-07
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	GAPA225 (protein)

Dong, X., Bessho, Y., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

2DUD	Download File View File

Crystal structure of human mitochondrial single-stranded DNA-binding protein(hmtSSB)

To be published

Released	2007-01-21
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Single-stranded DNA-binding protein (protein)

Dong, X., Shirouzu, M., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

2EGV	Download File View File

Crystal structure of rRNA methyltransferase with SAM ligand

To be published

Released	2007-09-04
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Aquifex aeolicus
Macromolecule	UPF0088 protein aq_165 (protein)
Unique Ligands	SAM

Dong, X., Shirouzu, M., Bessho, Y., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

2EGW	Download File View File

Crystal structure of rRNA methyltransferase with SAH ligand

To be published

Released	2007-09-04
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Aquifex aeolicus
Macromolecule	UPF0088 protein aq_165 (protein)
Unique Ligands	SAH

2L22	Download File View File

Mupirocin didomain ACP

Dong, X., Williams, C., Crump, M.P., Wattana-amorn, P.

(2013) Nat Chem Biol 9: 685-692

Released	2012-02-15
Method	SOLUTION NMR
Organisms	Pseudomonas fluorescens
Macromolecule	Mupirocin didomain Acyl Carrier Protein (protein)

2MVU	Download File View File

Solution Structure of the 3,7-dioxo-octyl Actinorhodin Acyl Carrier Protein from Streptomyces coelicolor

Dong, X., Bailey, C., Williams, C., Crosby, J., Simpson, T.J., Willis, C.L., Crump, M.P.

To be published

Released	2015-10-21
Method	SOLUTION NMR
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	Actinorhodin polyketide synthase acyl carrier protein (protein)
Unique Ligands	SDO

2MVV	Download File View File

Solution Structure of the 5-phenyl-3-oxo-pentyl Actinorhodin Acyl Carrier Protein from Streptomyces coelicolor

Dong, X., Bailey, C., Williams, C., Crosby, J., Simpson, T.J., Willis, C.L., Crump, M.P.

To be published

Released	2015-10-21
Method	SOLUTION NMR
Organisms	Streptomyces coelicolor A3(2)
Macromolecule	Actinorhodin polyketide synthase acyl carrier protein (protein)
Unique Ligands	SXR

3EBM	Download File View File

Crystal structure of human translationally controlled tumour associated protein (hTCTP) mutant E12V

Yang, B., Dong, X., Zhong, C., Ding, J.

(2009) J Biol Chem 284: 23754-23764

Released	2009-06-30
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Translationally-controlled tumor protein (protein)

3GB8	Download File View File

Crystal structure of CRM1/Snurportin-1 complex

Dong, X., Biswas, A., Suel, K.E., Jackson, L.K., Martinez, R., Gu, H., Chook, Y.M.

(2009) Nature 458: 1136-1141

Released	2009-03-31
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	Exportin-1 (protein) Snurportin-1 (protein)

3JXE	Download File View File

Crystal structure of Pyrococcus horikoshii tryptophanyl-tRNA synthetase in complex with TrpAMP

Zhou, M., Dong, X., Zhong, C., Shen, N., Yang, B., Ding, J.

To be published

Released	2009-11-10
Method	X-RAY DIFFRACTION 3 Å
Organisms	Pyrococcus horikoshii
Macromolecule	Tryptophanyl-tRNA synthetase (protein)
Unique Ligands	SO4, TYM

3KT0	Download File View File

Crystal structure of S. cerevisiae tryptophanyl-tRNA synthetase

(2010) Nucleic Acids Res 38: 3399-3413

Released	2010-02-16
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Tryptophanyl-tRNA synthetase, cytoplasmic (protein)
Unique Ligands	EMN

3KT3	Download File View File

Crystal structure of S. cerevisiae tryptophanyl-tRNA synthetase in complex with TrpAMP

(2010) Nucleic Acids Res 38: 3399-3413

Released	2010-02-16
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Tryptophanyl-tRNA synthetase, cytoplasmic (protein)
Unique Ligands	SO4, TYM

3KT6	Download File View File

Crystal structure of S. cerevisiae tryptophanyl-tRNA synthetase in complex with Trp

(2010) Nucleic Acids Res 38: 3399-3413

Released	2010-02-16
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Tryptophanyl-tRNA synthetase, cytoplasmic (protein)
Unique Ligands	SO4, TRP

3KT8	Download File View File

Crystal structure of S. cerevisiae tryptophanyl-tRNA synthetase in complex with L-tryptophanamide

(2010) Nucleic Acids Res 38: 3399-3413

Released	2010-02-16
Method	X-RAY DIFFRACTION 3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Tryptophanyl-tRNA synthetase, cytoplasmic (protein)
Unique Ligands	LTN, SO4

3PPV	Download File View File

Crystal structure of an engineered VWF A2 domain (N1493C and C1670S)

(2011) Blood 117: 4623-4631

Released	2011-05-04
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	von Willebrand factor (protein)
Unique Ligands	CA, SO4

3PPW	Download File View File

Crystal structure of the D1596A mutant of an engineered VWF A2 domain (N1493C and C1670S)

(2011) Blood 117: 4623-4631

Released	2011-05-04
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	von Willebrand factor (protein)
Unique Ligands	NA

3PPX	Download File View File

Crystal structure of the N1602A mutant of an engineered VWF A2 domain (N1493C and C1670S)

(2011) Blood 117: 4623-4631

Released	2011-05-04
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Homo sapiens
Macromolecule	von Willebrand factor (protein)
Unique Ligands	NA

3PPY	Download File View File

Crystal structure of the D1596A/N1602A double mutant of an engineered VWF A2 domain (N1493C and C1670S)

(2011) Blood 117: 4623-4631

Released	2011-05-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	von Willebrand factor (protein)
Unique Ligands	NA

4C29	Download File View File

Crystal Structure of High-Affinity von Willebrand Factor A1 domain with Disulfide Mutation

Blenner, M.A., Dong, X., Springer, T.A.

(2014) J Biol Chem 289: 5565

Released	2014-01-08
Method	X-RAY DIFFRACTION 2.202 Å
Organisms	Homo sapiens
Macromolecule	VON WILLEBRAND FACTOR (protein)
Unique Ligands	ACT, CA, PEG

4C2A	Download File View File

Crystal Structure of High-Affinity von Willebrand Factor A1 domain with R1306Q and I1309V Mutations in Complex with High Affinity GPIb alpha

Blenner, M.A., Dong, X., Springer, T.A.

(2014) J Biol Chem 289: 5565

Released	2014-01-08
Method	X-RAY DIFFRACTION 2.081 Å
Organisms	Homo sapiens
Macromolecule	PLATELET GLYCOPROTEIN IB ALPHA CHAIN (protein) VON WILLEBRAND FACTOR (protein)
Unique Ligands	ACT, CA, CAC, PEG

4C2B	Download File View File

Crystal Structure of High-Affinity von Willebrand Factor A1 domain with Disulfide Mutation in Complex with High Affinity GPIb alpha

Blenner, M.A., Dong, X., Springer, T.A.

(2014) J Biol Chem 289: 5565

Released	2014-01-08
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	PLATELET GLYCOPROTEIN IB ALPHA CHAIN (protein) VON WILLEBRAND FACTOR (protein)
Unique Ligands	MES, PEG, SO4

4G1E	Download File View File

Crystal structure of integrin alpha V beta 3 with coil-coiled tag.

Dong, X., Mi, L., Zhu, J., Wang, W., Luo, B., Springer, T.A.

(2012) Biochemistry 51: 8814-8828

Released	2012-12-12
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	Integrin alpha-V (protein) Integrin beta-3 (protein)
Unique Ligands	CA, CL, NAG, NI, SO4
Unique branched monosaccharides	BMA, MAN, NAG