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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Hoey, T."

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Search Summary

This query matches 117 Structures.

Refinements

Structure Determination Methodology

experimental (117)

Scientific Name of Source Organism

	Homo sapiens (54)
	Severe acute respiratory syndrome coronavirus 2 (18)
	Mus musculus (13)
	Synechococcus elongatus PCC 7942 = FACHB-805 (8)
	Arabidopsis thaliana (6)
	Saccharomyces cerevisiae (6)
	Bos taurus (5)
	Moesziomyces antarcticus (4)
	Plasmodium falciparum 3D7 (4)
	Cucurbita pepo (2)

More...

Taxonomy

	Eukaryota (99)
	Riboviria (19)
	Bacteria (11)
	Archaea (3)
	Duplodnaviria (3)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (75)
	ELECTRON MICROSCOPY (40)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (117)
	RNA (5)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (19)
	2.0 - 2.5 (22)
	2.5 - 3.0 (40)
	3.0 - 3.5 (25)
	3.5 - 4.0 (6)

Release Date

	2000 - 2004 (8)
	2005 - 2009 (12)
	2010 - 2014 (11)
	2015 - 2019 (23)
	2020 - 2024 (61)
	2025 - 2029 (2)

Enzyme Classification Name

	Transferases (27)
	Hydrolases (25)
	Lyases (3)
	Ligases (3)
	Oxidoreductases (3)

Membrane Protein Annotation

	OPM (14)
	PDBTM (11)
	mpstruc (2)
	MemProtMD (1)

Symmetry Type

	Asymmetric (82)
	Cyclic (34)
	Dihedral (6)

SCOP Classification

	Alpha and beta proteins (a+b) (19)
	Alpha and beta proteins (a/b) (11)
	All alpha proteins (6)
	Artifacts (5)
	All beta proteins (2)

AllSelected

1 to 25 of 117 Structures

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1EHB	Download File View File

CRYSTAL STRUCTURE OF RECOMBINANT TRYPSIN-SOLUBILIZED FRAGMENT OF CYTOCHROME B5

Wu, J., Gan, J.-H., Xia, Z.-X., Wang, Y.-H., Wang, W.-H., Xue, L.-L., Xie, Y., Huang, Z.-X.

(2000) Proteins 40: 249-257

Released	2000-08-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	PROTEIN (CYTOCHROME B5) (protein)
Unique Ligands	HEM

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1ES1	Download File View File

CRYSTAL STRUCTURE OF VAL61HIS MUTANT OF TRYPSIN-SOLUBILIZED FRAGMENT OF CYTOCHROME B5

Wu, J., Gan, J.-H., Xia, Z.-X., Wang, Y.-H., Wang, W.-H., Xue, L.-L., Xie, Y., Huang, Z.-X.

(2000) Proteins 40: 249-257

Released	2000-08-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bos taurus
Macromolecule	CYTOCHROME B5 (protein)
Unique Ligands	HEM

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1F03	Download File View File

SOLUTION STRUCTURE OF OXIDIZED BOVINE MICROSOMAL CYTOCHROME B5 MUTANT (E44A, E48A, E56A, D60A) AND ITS INTERACTION WITH CYTOCHROME C

Wu, Y.B., Lu, J., Qian, C.M., Tang, W.X., Li, E.C., Wang, J.F., Wang, Y.H., Wang, W.H., Lu, J.X., Xie, Y., Huang, Z.X.

(2001) Eur J Biochem 268: 1620-1630

Released	2000-06-21
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	CYTOCHROME B5 (protein)
Unique Ligands	HEM

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1F04	Download File View File

SOLUTION STRUCTURE OF OXIDIZED BOVINE MICROSOMAL CYTOCHROME B5 MUTANT (E44A, E48A, E56A, D60A) AND ITS INTERACTION WITH CYTOCHROME C

Wu, Y.B., Lu, J., Qian, C.M., Tang, W.X., Li, E.C., Wang, J.F., Wang, Y.H., Wang, W.H., Lu, J.X., Xie, Y., Huang, Z.X.

(2001) Eur J Biochem 268: 1620-1630

Released	2000-06-21
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	CYTOCHROME B5 (protein)
Unique Ligands	HEM

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1IWA	Download File View File

RUBISCO FROM GALDIERIA PARTITA

Okano, Y., Mizohata, E., Xie, Y., Matsumura, H., Sugawara, H., Inoue, T., Yokota, A., Kai, Y.

(2002) FEBS Lett 527: 33-36

Released	2003-04-30
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Galdieria partita
Macromolecule	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit (protein) ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit (protein)
Unique Ligands	SO4

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1M59	Download File View File

Crystal Structure of P40V Mutant of Trypsin-solubilized Fragment of Cytochrome b5

Wang, Z.-Q., Wu, J., Wang, Y.-H., Qian, W., Xie, Y., Xia, Z.-X., Huang, Z.-X.

(2002) Chin J Chem 20: 1212-1224

Released	2003-03-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bos taurus
Macromolecule	Cytochrome b5 (protein)
Unique Ligands	HEM

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1WS7	Download File View File

Crystal Structure of Mavicyanin from Cucurbita pepo medullosa (Zucchini)

Xie, Y., Inoue, T., Miyamoto, Y., Matsumura, H., Kataoka, K., Yamaguchi, K., Nojini, M., Suzuki, S., Kai, Y.

(2005) J Biochem 137: 455-461

Released	2004-11-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Cucurbita pepo
Macromolecule	Mavicyanin (protein)
Unique Ligands	CU1

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1WS8	Download File View File

Crystal Structure of Mavicyanin from Cucurbita pepo medullosa (Zucchini)

Xie, Y., Inoue, T., Miyamoto, Y., Matsumura, H., Kunishige, K., Yamaguchi, K., Nojini, M., Suzuki, S., Kai, Y.

(2005) J Biochem 137: 455-461

Released	2004-11-23
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Cucurbita pepo
Macromolecule	mavicyanin (protein)
Unique Ligands	CU, GOL

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2A7R	Download File View File

Crystal structure of human Guanosine Monophosphate reductase 2 (GMPR2)

Li, J., Wei, Z., Zheng, M., Gu, X., Deng, Y., Qiu, R., Chen, F., Ji, C., Gong, W., Xie, Y., Mao, Y.

(2006) J Mol Biol 355: 980-988

Released	2006-01-31
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	GMP reductase 2 (protein)
Unique Ligands	5GP, SO4

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2D7U	Download File View File

Crystal structure of hypothetical adenylosuccinate synthetase, PH0438 from Pyrococcus horikoshii OT3

Xie, Y., Kishisita, S., Murayama, K., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-05-29
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	Adenylosuccinate synthetase (protein)

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2DST	Download File View File

Crystal Structure Analysis of TT1977

Xie, Y., Kishishita, S., Murayama, K., Shirouzu, M., Chen, L., Liu, Z.J., Wang, B.C., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2007) Acta Crystallogr Sect F Struct Biol Cryst Commun 63: 993-997

Released	2007-01-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Thermus thermophilus
Macromolecule	Hypothetical protein TTHA1544 (protein)

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2DV6	Download File View File

Crystal structure of nitrite reductase from Hyphomicrobium denitrificans

Nojiri, M., Xie, Y., Yamamoto, T., Inoue, T., Suzuki, S., Kai, Y.

(2007) Proc Natl Acad Sci U S A 104: 4315-4320

Released	2007-02-20
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Hyphomicrobium denitrificans
Macromolecule	Nitrite reductase (protein)
Unique Ligands	CU, K

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2E0T	Download File View File

Crystal structure of catalytic domain of dual specificity phosphatase 26, MS0830 from Homo sapiens

Xie, Y., Kishishita, S., Murayama, K., Hori-Takemoto, C., Chen, L., Liu, Z.J., Wang, B.C., Shirozu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2013) Acta Crystallogr D Biol Crystallogr 69: 1160-1170

Released	2007-10-16
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Homo sapiens
Macromolecule	Dual specificity phosphatase 26 (protein)

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2E7V	Download File View File

Crystal structure of SEA domain of transmembrane protease from Mus musculus

Xie, Y., Kishishita, S., Murayama, K., Hori-Takemoto, C., Shirozu, M., Yokoyama, S., Chen, L., Liu, Z.J., Wang, B.C., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-07-17
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Mus musculus
Macromolecule	Transmembrane protease (protein)

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2EAQ	Download File View File

Crystal structure of PDZ domain of KIAA0858 (LIM), MS0793 from Homo sapiens

Xie, Y., Kishishita, S., Murayama, K., Takemoto, C., Shirozu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2007-07-31
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Homo sapiens
Macromolecule	LIM domain only protein 7 (protein)
Unique Ligands	NI

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2J14	Download File View File

3,4,5-Trisubstituted Isoxazoles as Novel PPARdelta Agonists: Part2

Epple, R., Azimioara, M., Russo, R., Xie, Y., Wang, X., Cow, C., Wityak, J., Karanewsky, D., Bursulaya, B., Kreusch, A., Tuntland, T., Gerken, A., Iskandar, M., Saez, E., Seidel, H.M., Tian, S.S.

(2006) Bioorg Med Chem Lett 16: 5488

Released	2006-09-06
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	PEROXISOME PROLIFERATOR-ACTIVATED RECEPTOR DELTA (protein)
Unique Ligands	GNI

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2YVQ	Download File View File

Crystal structure of MGS domain of carbamoyl-phosphate synthetase from homo sapiens

Xie, Y., Ihsanawati, Kishishita, S., Murayama, K., Takemoto, C., Shirozu, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-04-15
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Homo sapiens
Macromolecule	Carbamoyl-phosphate synthase (protein)

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2YY0	Download File View File

Crystal Structure of MS0802, c-Myc-1 binding protein domain from Homo sapiens

Xie, Y., Wang, H., Ihsanawati, K.T., Kishishita, S., Takemoto, C., Shirozu, M., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-04-29
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	C-Myc-binding protein (protein)

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2Z0I	Download File View File

Crystal Structure of 5-aminolevulinic acid dehydratase (ALAD) from Mus musculus

Wang, H., Xie, Y., Kawazoe, M., Kishishita, S., Murayama, K., Takemoto, C., Terada, T., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-05-13
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Mus musculus
Macromolecule	Delta-aminolevulinic acid dehydratase (protein)

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2Z1B	Download File View File

Crystal Structure of 5-aminolevulinic acid dehydratase (ALAD) from Mus musculs

Xie, Y., Wang, H., Kawazoe, M., Kishishita, S., Murayama, K., Takemoto, C., Terada, T., Shirozu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2008-05-13
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Mus musculus
Macromolecule	Delta-aminolevulinic acid dehydratase (protein)

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3O4Z	Download File View File

Tel2 structure and function in the Hsp90-dependent maturation of mTOR and ATR complexes

Xie, Y., Pavletich, N.P.

(2010) Genes Dev 24: 2019-2030

Released	2010-09-15
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Telomere length regulation protein TEL2 (protein)

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3VHX	Download File View File

The crystal structure of Arf6-MKLP1 (Mitotic kinesin-like protein 1) complex

Makyio, H., Takei, T., Ohgi, H., Takahashi, S., Takatsu, H., Ueda, T., Kanaho, Y., Xie, Y., Shin, H.W., Kamikubo, H., Kataoka, M., Kawasaki, M., Kato, R., Wakatsuki, S., Nakayama, K.

(2012) EMBO J 31: 2590-2603

Released	2012-05-16
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	ADP-ribosylation factor 6 (protein) Kinesin-like protein KIF23 (protein)
Unique Ligands	GOL, GTP, MG

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4A3N	Download File View File

Crystal Structure of HMG-BOX of Human SOX17

Gao, N., Gao, H., Qian, H., Si, S., Xie, Y.

(2013) Protein Pept Lett 20: 481

Released	2011-12-28
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	TRANSCRIPTION FACTOR SOX-17 (protein)
Unique Ligands	ZN

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4DCN	Download File View File

Crystal Structure Analysis of the Arfaptin2 BAR domain in Complex with ARL1

Nakamura, K., Xie, Y., Kawasaki, M., Kato, R., Wakatsuki, S.

(2012) J Biol Chem 287: 25478-25489

Released	2012-06-13
Method	X-RAY DIFFRACTION 3.01 Å
Organisms	Homo sapiens
Macromolecule	ADP-ribosylation factor-like protein 1 (protein) Arfaptin-2 (protein)
Unique Ligands	GNP, MG