RCSB PDB: Search

6QD5 \| pdb_00006qd5	Download File View File

X-ray Structure of the Human Urea Channel SLC14A1/UT1

Dietz, L., Chi, G., Pike, A.C.W., Moreau, C., Man, H., Snee, M., Scacioc, A., Shrestha, L., Mukhopadhyay, S.M.M., Mckinley, G., Ellis, K., Kliszcak, M., Chalk, R., Borkowska, O., Burgess-Brown, N.A., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Durr, K.L., Structural Genomics Consortium (SGC)

To be published

Released	2019-01-09
Method	X-RAY DIFFRACTION 2.398 Å
Organisms	Homo sapiens
Macromolecule	Urea transporter 1 (protein)
Unique Ligands	BOG, PG4, Y01

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6XY7 \| pdb_00006xy7	Download File View File

Human SHIP1 with magnesium and phosphate bound to the active site

Bradshaw, W.J., Scacioc, A., Fernandez-Cid, A., Mckinley, G., Burgess-Brown, N.A., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Gileadi, O.

(2024) Structure

Released	2020-02-26
Method	X-RAY DIFFRACTION 1.086 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 1 (protein)
Unique Ligands	DMS, MG, PGE, PO4

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6Y5R \| pdb_00006y5r	Download File View File

Structure of Human Potassium Chloride Transporter KCC3 S45D/T940D/T997D in NaCl

Chi, G., Man, H., Ebenhoch, R., Reggiano, G., Pike, A.C.W., Wang, D., McKinley, G., Mukhopadhyay, S.M.M., MacLean, B., Chalk, R., Moreau, C., Snee, M., Bohstedt, T., Singh, N.K., Abrusci, P., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Marsden, B.D., Burgess-Brown, N.A., DiMaio, F., Duerr, K.L., Structural Genomics Consortium (SGC)

To be published

Released	2020-03-11
Method	ELECTRON MICROSCOPY 3.76 Å
Organisms	Homo sapiens
Macromolecule	Solute carrier family 12 member 6 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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6Y5V \| pdb_00006y5v	Download File View File

Structure of Human Potassium Chloride Transporter KCC3b (S45D/T940D/T997D) in KCl

Chi, G., Man, H., Ebenhoch, R., Reggiano, G., Pike, A.C.W., Wang, D., McKinley, G., Mukhopadhyay, S.M.M., MacLean, E.M., Chalk, R., Moreau, C., Snee, M., Bohstedt, T., Singh, N.K., Abrusci, P., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Marsden, B.D., Burgess-Brown, N.A., DiMaio, F., Duerr, K.L.

(2021) EMBO J 40: e107294-e107294

Released	2020-07-15
Method	ELECTRON MICROSCOPY 4.08 Å
Organisms	Homo sapiens
Macromolecule	Solute carrier family 12 member 6 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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6Y6C \| pdb_00006y6c	Download File View File

TREM2 extracellular domain (19-174) in complex with single-chain variable fragment (scFv-4)

Szykowska, A., Preger, C., Williams, E., Mukhopadhyay, S.M.M., McKinley, G., Gruslund, S., Wigren, E., Persson, H., Arrowsmith, C.H., Edwards, A., von Delft, F., Bountra, C., Davis, J.B., Di Daniel, E., Burgess-Brown, N., Bullock, A.

(2021) Structure 29: 1241-1252.e5

Released	2021-02-17
Method	X-RAY DIFFRACTION 2.26 Å
Organisms	Homo sapiens
Macromolecule	Single chain variable (protein) Triggering receptor expressed on myeloid cells 2 (protein)
Unique Ligands	NAG

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6YMQ \| pdb_00006ymq	Download File View File

TREM2 extracellular domain (19-131) in complex with single-chain variable 4 (scFv-4)

Szykowska, A., Preger, C., Scacioc, A., Mukhopadhyay, S.M.M., McKinley, G., Graslund, S., Wigren, E., Persson, H., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Di Daniel, E., Davis, J.B., Burgess-Brown, N., Bullock, A.

(2021) Structure 29: 1241-1252.e5

Released	2021-02-17
Method	X-RAY DIFFRACTION 3.07 Å
Organisms	Homo sapiens
Macromolecule	Single-chain variable 4 (protein) Triggering receptor expressed on myeloid cells 2 (protein)
Unique Ligands	MPD, NAG

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6YYE \| pdb_00006yye	Download File View File

TREM2 extracellular domain (19-131) in complex with single-chain variable fragment (scFv-2)

Szykowska, A., Preger, C., Krojer, T., Mukhopadhyay, S.M.M., McKinley, G., Graslund, S., Wigren, E., Persson, H., von Delft, F., Arrowsmith, C.H., Edwards, A., Bountra, C., Di Daniel, E., Burgess-Brown, N., Bullock, A.

(2021) Structure 29: 1241-1252.e5

Released	2021-02-17
Method	X-RAY DIFFRACTION 3.36 Å
Organisms	Homo sapiens
Macromolecule	TREM2 Single chain variable 2 (protein) Triggering receptor expressed on myeloid cells 2 (protein)
Unique Ligands	NAG

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7AIN \| pdb_00007ain	Download File View File

Structure of Human Potassium Chloride Transporter KCC3 S45D/T940D/T997D in NaCl (Reference Map)

Chi, G., Man, H., Ebenhoch, R., Reggiano, G., Pike, A.C.W., Wang, D., McKinley, G., Mukhopadhyay, S.M.M., MacLean, E.M., Chalk, R., Moreau, C., Snee, M., Bohstedt, T., Singh, N.K., Abrusci, P., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Marsden, B.D., Burgess-Brown, N.A., DiMaio, F., Duerr, K.L., Structural Genomics Consortium (SGC)

(2021) EMBO J 40: e107294-e107294

Released	2021-06-02
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Homo sapiens
Macromolecule	Isoform 2 of Solute carrier family 12 member 6 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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7AIO \| pdb_00007aio	Download File View File

Structure of Human Potassium Chloride Transporter KCC3 S45D/T940D/T997D in NaCl (Subclass)

Chi, G., Man, H., Ebenhoch, R., Reggiano, G., Pike, A.C.W., Wang, D., McKinley, G., Mukhopadhyay, S.M.M., MacLean, E.M., Chalk, R., Moreau, C., Snee, M., Bohstedt, T., Singh, N.K., Abrusci, P., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Marsden, B.D., Burgess-Brown, N.A., DiMaio, F., Duerr, K.L., Structural Genomics Consortium (SGC)

(2021) EMBO J 40: e107294-e107294

Released	2021-06-02
Method	ELECTRON MICROSCOPY 3.31 Å
Organisms	Homo sapiens
Macromolecule	Solute carrier family 12 member 6 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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7AIP \| pdb_00007aip	Download File View File

Structure of Human Potassium Chloride Transporter KCC1 in NaCl (Reference Map)

Ebenhoch, R., Chi, G., Man, H., Wang, D., McKinley, G., Mukhopadhyay, S.M.M., MacLean, E.M., Chalk, R., Moreau, C., Snee, M., Bohstedt, T., Liko, I., Tehan, B.G., Almeida, F.G., Elkins, J., Singh, N.K., Abrusci, P., Arrowsmith, C.H., Tang, H., Robinson, C.V., Bountra, C., Edwards, A.M., Marsden, B.D., Burgess-Brown, N.A., Duerr, K.L., Structural Genomics Consortium (SGC)

(2021) EMBO J 40: e107294-e107294

Released	2021-06-02
Method	ELECTRON MICROSCOPY 3.12 Å
Organisms	Homo sapiens
Macromolecule	Solute carrier family 12 member 4 (protein)
Unique Ligands	ATP, MG
Unique branched monosaccharides	BMA, NAG

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7AIQ \| pdb_00007aiq	Download File View File

Structure of Human Potassium Chloride Transporter KCC1 in NaCl (Subclass 1)

Ebenhoch, R., Chi, G., Man, H., Wang, D., McKinley, G., Mukhopadhyay, S.M.M., MacLean, E.M., Chalk, R., Moreau, C., Snee, M., Bohstedt, T., Singh, N.K., Abrusci, P., Liko, I., Tehan, B.G., Almeida, F.G., Arrowsmith, C.H., Tang, H., Robinson, C.V., Bountra, C., Edwards, A.M., Marsden, B.D., Burgess-Brown, N.A., Duerr, K.L., Structural Genomics Consortium (SGC)

(2021) EMBO J 40: e107294-e107294

Released	2021-06-02
Method	ELECTRON MICROSCOPY 3.72 Å
Organisms	Homo sapiens
Macromolecule	Solute carrier family 12 member 4 (protein)
Unique Ligands	ATP, NAG
Unique branched monosaccharides	BMA, NAG

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7AIR \| pdb_00007air	Download File View File

Structure of Human Potassium Chloride Transporter KCC1 in NaCl (Subclass 2)

Ebenhoch, R., Chi, G., Man, H., Wang, D., McKinley, G., Mukhopadhyay, S.M.M., MacLean, E.M., Chalk, R., Moreau, C., Snee, M., Bohstedt, T., Singh, N.K., Abrusci, P., Liko, I., Tehan, B.G., Almeida, F.G., Arrowsmith, C.H., Tang, H., Robinson, C.V., Bountra, C., Edwards, A.M., Marsden, B.D., Burgess-Brown, N.A., Duerr, K.L., Structural Genomics Consortium (SGC)

(2021) EMBO J 40: e107294-e107294

Released	2021-06-02
Method	ELECTRON MICROSCOPY 3.66 Å
Organisms	Homo sapiens
Macromolecule	Solute carrier family 12 member 4 (protein)
Unique Ligands	ATP, NAG
Unique branched monosaccharides	BMA, NAG

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7NGB \| pdb_00007ngb	Download File View File

Structure of Wild-Type Human Potassium Chloride Transporter KCC3 in NaCl (LMNG/CHS)

Chi, G., Man, H., Pike, A.C.W., Wang, D., McKinley, G., Mukhopadhyay, S.M.M., MacLean, E.M., Chalk, R., Moreau, C., Snee, M., Abrusci, P., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Marsden, B.D., Burgess-Brown, N.A., Duerr, K.L.

(2021) EMBO J 40: e107294-e107294

Released	2021-06-09
Method	ELECTRON MICROSCOPY 3.64 Å
Organisms	Homo sapiens
Macromolecule	Isoform 2 of Solute carrier family 12 member 6 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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7PHH \| pdb_00007phh	Download File View File

Human voltage-gated potassium channel Kv3.1 (apo condition)

Chi, G., Venkaya, S., Singh, N.K., McKinley, G., Mukhopadhyay, S.M.M., Marsden, B., MacLean, E.M., Fernandez-Cid, A., Pike, A.C.W., Savva, C., Ragan, T.J., Burgess-Brown, N.A., Duerr, K.L.

(2022) Nat Commun 13: 4087-4087

Released	2022-03-02
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Homo sapiens
Macromolecule	Potassium voltage-gated channel, Shaw-related subfamily, member 1 (protein)
Unique Ligands	K, PCF, ZN

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7PHI \| pdb_00007phi	Download File View File

Human voltage-gated potassium channel Kv3.1 (with Zn)

Chi, G., Qian, P., Castro-Hartmann, P., Venkaya, S., Singh, N.K., McKinley, G., Mukhopadhyay, S.M.M., Fernandez-Cid, A., Marsden, B., MacLean, E.M., Pike, A.C.W., Sader, K., Burgess-Brown, N.A., Duerr, K.L.

(2022) Nat Commun 13: 4087-4087

Released	2022-03-02
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens
Macromolecule	Potassium voltage-gated channel, Shaw-related subfamily, member 1 (protein)
Unique Ligands	K, PCF, ZN

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7PHK \| pdb_00007phk	Download File View File

Human voltage-gated potassium channel Kv3.1 in dimeric state (with Zn)

Chi, G., Qian, P., Castro-Hartmann, P., Venkaya, S., Singh, N.K., McKinley, G., Mukhopadhyay, S.M.M., Marsden, B., MacLean, E.M., Fernandez-Cid, A., Pike, A.C.W., Sader, K., Burgess-Brown, N.A., Duerr, K.L.

(2022) Nat Commun 13: 4087-4087

Released	2022-03-02
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Homo sapiens
Macromolecule	Potassium voltage-gated channel, Shaw-related subfamily, member 1 (protein)
Unique Ligands	K, PCF, ZN

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7PHL \| pdb_00007phl	Download File View File

Human voltage-gated potassium channel Kv3.1 (with EDTA)

Chi, G., Qian, P., Castro-Hartmann, P., Venkaya, S., Singh, N.K., McKinley, G., Mukhopadhyay, S.M.M., Fernandez-Cid, A., Pike, A.C.W., Marsden, B., MacLean, E.M., Sader, K., Burgess-Brown, N.A., Duerr, K.L.

(2022) Nat Commun 13: 4087-4087

Released	2022-03-02
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Homo sapiens
Macromolecule	Potassium voltage-gated channel, Shaw-related subfamily, member 1 (protein)
Unique Ligands	K, PCF, ZN

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7QZQ \| pdb_00007qzq	Download File View File

Crystal structure of the kelch domain of human KBTBD12

Manning, C.E., Chen, Z., Chen, X., Bradshaw, W.J., Bakshi, S., Mckinley, G., Chalk, R., Burgess-Brown, N., von Delft, F., Bullock, A.N.

To be published

Released	2022-05-04
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens
Macromolecule	Kelch repeat and BTB domain-containing protein 12 (protein)
Unique Ligands	EDO, NA

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8BLO \| pdb_00008blo	Download File View File

Human Urea Transporter UT-A (N-Terminal Domain Model)

Chi, G., Pike, A.C.W., Maclean, E.M., Mukhopadhyay, S.M.M., Bohstedt, T., Scacioc, A., Wang, D., McKinley, G., Fernandez-Cid, A., Arrowsmith, C.H., Bountra, C., Edwards, A., Burgess-Brown, N.A., van Putte, W., Duerr, K.

(2023) Sci Adv 9: eadg8229-eadg8229

Released	2023-10-04
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Homo sapiens
Macromolecule	Urea transporter 2 (protein)
Unique Ligands	LMN, PLD

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8BLP \| pdb_00008blp	Download File View File

Human Urea Transporter UT-B/UT1 in Complex with Inhibitor UTBinh-14

Chi, G., Dietz, L., Pike, A.C.W., Maclean, E.M., Mukhopadhyay, S.M.M., Bohstedt, T., Wang, D., Scacioc, A., McKinley, G., Arrowsmith, C.H., Edwards, A., Bountra, C., Fernandez-Cid, A., Burgess-Brown, N.A., Duerr, K.L.

(2023) Sci Adv 9: eadg8229-eadg8229

Released	2023-10-04
Method	ELECTRON MICROSCOPY 2.6 Å
Organisms	Homo sapiens
Macromolecule	Urea transporter 1 (protein)
Unique Ligands	5D3, LMT, PTY, Y01

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8OUO \| pdb_00008ouo	Download File View File

Human TPC2 in Complex with Antagonist (S)-SG-094

Chi, G., Pike, A.C.W., Maclean, E.M., Li, H., Mukhopadhyay, S.M.M., Bohstedt, T., Wang, D., McKinley, G., Fernandez-Cid, A., Duerr, K.

(2024) Structure 32: 1137-1149.e4

Released	2024-06-12
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Homo sapiens
Macromolecule	Two pore channel protein 2 (protein)
Unique Ligands	PCF, PLD, Q7G, W4E, Y01

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8QUC \| pdb_00008quc	Download File View File

Cryo-EM Structure of Human Kv3.1 in Complex with Modulator AUT1

Chi, G., Mckinley, G., Marsden, B., Pike, A.C.W., Ye, M., Brooke, L.M., Bakshi, S., Pilati, N., Marasco, A., Gunthorpe, M., Alvaro, G., Large, C., Lakshminaraya, B., Williams, E., Sauer, D.B.

(2024) Nat Commun 15: 2533-2533

Released	2024-04-03
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Homo sapiens
Macromolecule	Potassium voltage-gated channel subfamily C member 1 (protein)
Unique Ligands	K, PCF, WY9, Y01, ZN

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8QUD \| pdb_00008qud	Download File View File

Cryo-EM Structure of Human Kv3.1 in Complex with Modulator AUT5

Chi, G., Mckinley, G., Marsden, B., Pike, A.C.W., Ye, M., Brooke, L.M., Bakshi, S., Lakshminarayana, B., Pilati, N., Marasco, A., Gunthorpe, M., Alvaro, G.S., Large, C.H., Williams, E., Sauer, D.B.

(2024) Nat Commun 15: 2533-2533

Released	2024-04-03
Method	ELECTRON MICROSCOPY 2.5 Å
Organisms	Homo sapiens
Macromolecule	Potassium voltage-gated channel subfamily C member 1 (protein)
Unique Ligands	K, PCF, WY0, Y01, ZN

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8QV5 \| pdb_00008qv5	Download File View File

Structure of human SPNS2 in LMNG

Li, H.Z., Pike, A.C.W., McKinley, G., Mukhopadhyay, S.M.M., Moreau, C., Scacioc, A., Abrusci, P., Borkowska, O., Chalk, R., Stefanic, S., Burgess-Brown, N., Duerr, K.L., Sauer, D.B.

(2025) Nat Commun 16: 721-721

Released	2025-02-19
Method	ELECTRON MICROSCOPY 3.69 Å
Organisms	Homo sapiens Vicugna pacos
Macromolecule	Nanobody D12 (protein) Sphingosine-1-phosphate transporter SPNS2 (protein)

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8QV6 \| pdb_00008qv6	Download File View File

Structure of human SPNS2 in DDM

Li, H.Z., Pike, A.C.W., McKinley, G., Mukhopadhyay, S.M.M., Moreau, C., Scacioc, A., Abrusci, P., Borkowska, O., Chalk, R., Stefanic, S., Burgess-Brown, N., Duerr, K.L., Sauer, D.B.

(2025) Nat Commun 16: 721-721

Released	2025-02-19
Method	ELECTRON MICROSCOPY 3.68 Å
Organisms	Homo sapiens Vicugna pacos
Macromolecule	Nanobody D12 (protein) Sphingosine-1-phosphate transporter SPNS2 (protein)
Unique Ligands	LMT

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

6QD5 | pdb_00006qd5

6XY7 | pdb_00006xy7

6Y5R | pdb_00006y5r

6Y5V | pdb_00006y5v

6Y6C | pdb_00006y6c

6YMQ | pdb_00006ymq

6YYE | pdb_00006yye

7AIN | pdb_00007ain

7AIO | pdb_00007aio

7AIP | pdb_00007aip

7AIQ | pdb_00007aiq

7AIR | pdb_00007air

7NGB | pdb_00007ngb

7PHH | pdb_00007phh

7PHI | pdb_00007phi

7PHK | pdb_00007phk

7PHL | pdb_00007phl

7QZQ | pdb_00007qzq

8BLO | pdb_00008blo

8BLP | pdb_00008blp

8OUO | pdb_00008ouo

8QUC | pdb_00008quc

8QUD | pdb_00008qud

8QV5 | pdb_00008qv5

8QV6 | pdb_00008qv6