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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Pegan, S.D."

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Search Summary

This query matches 72 Structures.

Refinements

Structure Determination Methodology

experimental (72)

Scientific Name of Source Organism

	Homo sapiens (44)
	Orthonairovirus haemorrhagiae (5)
	Mus musculus (4)
	Alteromonas sp. (3)
	Mycobacterium tuberculosis H37Rv (3)
	Severe acute respiratory syndrome-related coronavirus (3)
	Bat SARS CoV Rf1/2004 (2)
	Gallus gallus (2)
	Human betacoronavirus 2c EMC/2012 (2)
	Mycobacterium tuberculosis (2)

More...

Taxonomy

	Eukaryota (53)
	Riboviria (20)
	Bacteria (10)
	unclassified viruses (3)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (72)

Polymer Entity Type

Protein (72)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (10)
	2.0 - 2.5 (37)
	2.5 - 3.0 (14)
	3.0 - 3.5 (5)
	3.5 - 4.0 (2)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (20)
	2015 - 2019 (24)
	2020 - 2024 (26)

Enzyme Classification Name

	Hydrolases (38)
	Transferases (13)
	Oxidoreductases (8)
	Lyases (7)
	Isomerases (4)

Symmetry Type

	Asymmetric (24)
	Cyclic (44)
	Dihedral (5)

SCOP Classification

	Alpha and beta proteins (a/b) (36)
	Alpha and beta proteins (a+b) (13)
	All alpha proteins (2)
	Artifacts (4)

AllSelected

1 to 25 of 72 Structures

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3G5M	Download File View File

Synthesis of Casimiroin and Optimization of Its Quinone Reductase 2 and Aromatase Inhibitory activity

Maiti, A., Sturdy, M., Marler, L., Pegan, S.D., Mesecar, A.D., Pezzuto, J.M., Cushman, M.

(2009) J Med Chem 52: 1873-1884

Released	2009-03-24
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Homo sapiens
Macromolecule	Ribosyldihydronicotinamide dehydrogenase [quinone] (protein)
Unique Ligands	FAD, XM5, ZN

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3GAM	Download File View File

Synthesis of Casimiroin and Optimization of Its Quinone Reductase 2 and Aromatase Inhibitory activity

Sturdy, M., Pegan, S.D., Maiti, A., Marler, L., Mesecar, A.D., Pezzuto, J.M., Cushman, M.

(2009) J Med Chem 52: 1873-1884

Released	2009-03-24
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Homo sapiens
Macromolecule	Ribosyldihydronicotinamide dehydrogenase [quinone] (protein)
Unique Ligands	FAD, MXX, ZN

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3MB2	Download File View File

Kinetic and Structural Characterization of a Heterohexamer 4-Oxalocrotonate Tautomerase from Chloroflexus aurantiacus J-10-fl: Implications for Functional and Structural Diversity in the Tautomerase Superfamily

Burks, E.A., Fleming, C.D., Mesecar, A.D., Whitman, C.P., Pegan, S.D.

(2010) Biochemistry 49: 5016-5027

Released	2010-06-02
Method	X-RAY DIFFRACTION 2.41 Å
Organisms	Chloroflexus aurantiacus J-10-fl
Macromolecule	4-oxalocrotonate tautomerase family enzyme - alpha subunit (protein) 4-oxalocrotonate tautomerase family enzyme - beta subunit (protein)
Unique Ligands	SO4

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3MJ5	Download File View File

Severe Acute Respiratory Syndrome-Coronavirus Papain-Like Protease Inhibitors: Design, Synthesis, Protein-Ligand X-ray Structure and Biological Evaluation

Mesecar, A.D., Ratia, K.M., Pegan, S.D.

(2010) J Med Chem 53: 4968-4979

Released	2010-06-30
Method	X-RAY DIFFRACTION 2.63 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	Replicase polyprotein 1a (protein)
Unique Ligands	GRM, ZN

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3OVM	Download File View File

X-ray Structural study of quinone reductase II inhibition by compounds with micromolar to nanomolar range IC50 values

Pegan, S.D., Sturdy, M., Ferry, G., Delagrange, P., Boutin, J.A.

(2011) Protein Sci 20: 1182-1195

Released	2011-05-25
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Homo sapiens
Macromolecule	Ribosyldihydronicotinamide dehydrogenase [quinone] (protein)
Unique Ligands	FAD, MZC, ZN

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3OWH	Download File View File

X-ray Structural study of quinone reductase II inhibition by compounds with micromolar to nanomolar range IC50 values

Pegan, S.D., Sturdy, M., Mesecar, A.D.

(2011) Protein Sci 20: 1182-1195

Released	2011-05-25
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Homo sapiens
Macromolecule	Ribosyldihydronicotinamide dehydrogenase [quinone] (protein)
Unique Ligands	52X, FAD, ZN

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3OWX	Download File View File

X-ray Structural study of quinone reductase II inhibition by compounds with micromolar to nanomolar range IC50 values

Pegan, S.D., Sturdy, M., Ferry, G., Delagrange, P., Boutin, J.A., Mesecar, A.D.

(2011) Protein Sci 20: 1182-1195

Released	2011-05-25
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	Ribosyldihydronicotinamide dehydrogenase [quinone] (protein)
Unique Ligands	FAD, XRA, ZN

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3OX1	Download File View File

X-ray Structural study of quinone reductase II inhibition by compounds with micromolar to nanomolar range IC50 values

Pegan, S.D., Sturdy, M., Ferry, G., Delagrange, P., Boutin, J.A., Mesecar, A.D.

(2011) Protein Sci 20: 1182-1195

Released	2011-05-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Ribosyldihydronicotinamide dehydrogenase [quinone] (protein)
Unique Ligands	695, FAD, ZN

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3OX2	Download File View File

X-ray Structural study of quinone reductase II inhibition by compounds with micromolar to nanomolar range IC50 values

Pegan, S.D., Sturdy, M., Mesecar, A.D.

(2011) Protein Sci 20: 1182-1195

Released	2011-05-25
Method	X-RAY DIFFRACTION 2.41 Å
Organisms	Homo sapiens
Macromolecule	Ribosyldihydronicotinamide dehydrogenase [quinone] (protein)
Unique Ligands	79X, FAD, ZN

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3OX3	Download File View File

X-ray Structural study of quinone reductase II inhibition by compounds with micromolar to nanomolar range IC50 values

Pegan, S.D., Sturdy, M., Ferry, G., Delagrange, P., Boutin, J.A., Mesecar, A.D.

(2011) Protein Sci 20: 1182-1195

Released	2011-05-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Ribosyldihydronicotinamide dehydrogenase [quinone] (protein)
Unique Ligands	4X4, FAD, ZN

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3PRM	Download File View File

Structural analysis of a viral OTU domain protease from the Crimean-Congo Hemorrhagic Fever virus in complex with human ubiquitin

Capodagli, G.C., McKercher, M.A., Baker, E.A., Masters, E.M., Brunzelle, J.S., Pegan, S.D.

(2011) J Virol 85: 3621-3630

Released	2011-01-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Orthonairovirus haemorrhagiae
Macromolecule	Polyubiquitin-B (Fragment) (protein) RNA-directed RNA polymerase L (protein)

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3PRP	Download File View File

Structural analysis of a viral OTU domain protease from the Crimean-Congo Hemorrhagic Fever virus in complex with human ubiquitin

Capodagli, G.C., McKercher, M.A., Baker, E.A., Masters, E.M., Brunzelle, J.S., Pegan, S.D.

(2011) J Virol 85: 3621-3630

Released	2011-01-26
Method	X-RAY DIFFRACTION 1.699 Å
Organisms	Homo sapiens Orthonairovirus haemorrhagiae
Macromolecule	Polyubiquitin-B (Fragment) (protein) RNA-directed RNA polymerase L (protein)

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3TA6	Download File View File

Structure of Mycobacterium tuberculosis triosephosphate isomerase

Connor, S.E., Capodagli, G.C., Deaton, M.K., Pegan, S.D.

(2011) Acta Crystallogr D Biol Crystallogr 67: 1017-1022

Released	2011-11-30
Method	X-RAY DIFFRACTION 1.41 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Triosephosphate isomerase (protein)
Unique Ligands	FLC

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3TAO	Download File View File

Structure of Mycobacterium tuberculosis triosephosphate isomerase bound to phosphoglycolohydroxamate

Connor, S.E., Capodagli, G.C., Deaton, M.K., Pegan, S.D.

(2011) Acta Crystallogr D Biol Crystallogr 67: 1017-1022

Released	2011-11-30
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Triosephosphate isomerase (protein)
Unique Ligands	PGH

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4DEF	Download File View File

Active site loop dynamics of a class IIa fructose 1,6-bisphosphate aldolase from M. tuberculosis

Capodagli, G.C., Pegan, S.D.

(2013) Biochemistry 52: 912-925

Released	2013-01-23
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Fructose-bisphosphate aldolase (protein)
Unique Ligands	ACT, NA, ZN

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4DEL	Download File View File

Active site loop dynamics of a class IIa fructose 1,6-bisphosphate aldolase from M. tuberculosis

Pegan, S.D., Mesecar, A.D.

(2013) Biochemistry 52: 912-925

Released	2013-01-23
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	Fructose-bisphosphate aldolase (protein)
Unique Ligands	ACT, NA, P6G, PGH, ZN

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4FFX	Download File View File

Structural and Biochemical Characterization of Human Adenylosuccinate Lyase (ADSL) and the R303C ADSL Deficiency Associated Mutation

Deaton, M.K., Ray, S.P., Capodagli, G.C., Calkins, L.A.F., Sawle, L., Ghosh, K., Patterson, D., Pegan, S.D.

(2012) Biochemistry 51: 6701-6713

Released	2012-08-01
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Adenylosuccinate lyase (protein)

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4FLC	Download File View File

Structural and Biochemical Characterization of Human Adenylosuccinate Lyase (ADSL) and the R303C ADSL Deficiency Associated Mutation

Deaton, M.K., Ray, S.P., Capodagli, G.C., Calkins, L.A.F., Sawle, L., Ghosh, K., Patterson, D., Pegan, S.D.

(2012) Biochemistry 51: 6701-6713

Released	2012-08-01
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Adenylosuccinate lyase (protein)

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4HXD	Download File View File

Diversity of ubiquitin and ISG15 specificity amongst nairoviruses viral ovarian tumor domain proteases

Capodagli, G.C., Pegan, S.D.

(2013) J Virol 87: 3815-3827

Released	2013-02-13
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Dugbe virus (isolate ArD44313) Homo sapiens
Macromolecule	Polyubiquitin-C (protein) RNA-directed RNA polymerase L (protein)
Unique Ligands	4LJ, SO4

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4LV4	Download File View File

A noncompetitive inhibitor for M. tuberculosis's class IIa fructose 1,6-bisphosphate aldolase

Capodagli, G.C., Pegan, S.D.

(2014) Biochemistry 53: 202-213

Released	2014-01-08
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Fructose-bisphosphate aldolase (protein)
Unique Ligands	1PE, 8HC, ACT, ZN

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4P61	Download File View File

CHICKEN TRIOSEPHOSPHATE ISOMERASE WITH LOOP6 MUTATIONS, V167P AND W168E.

Pegan, S.D., Mesecar, A.D.

(2014) Biochemistry 53: 3486-3501

Released	2014-08-27
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Gallus gallus
Macromolecule	Triosephosphate isomerase (protein)

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4TO8	Download File View File

Methicillin-Resistant Staphylococcus Aureus Class IIb Fructose 1,6-Bisphosphate Aldolase

Capodagli, G.C., Pegan, S.D.

(2014) Biochemistry 53: 7604-7614

Released	2014-11-26
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Staphylococcus aureus
Macromolecule	Fructose-1,6-bisphosphate aldolase, class II (protein)
Unique Ligands	FLC, ZN

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4ZWO	Download File View File

Crystal structure of organophosphate anhydrolase/prolidase mutant Y212F

Daczkowski, C.M., Pegan, S.D., Harvey, S.P.

(2015) Biochemistry 54: 6423-6433

Released	2015-10-14
Method	X-RAY DIFFRACTION 2.141 Å
Organisms	Alteromonas sp.
Macromolecule	organophosphate anhydrolase/prolidase (protein)
Unique Ligands	GOA, GOL, MN

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4ZWP	Download File View File

Crystal structure of organophosphate anhydrolase/prolidase mutant Y212F

Daczkowski, C.M., Pegan, S.D., Harvey, S.P.

(2015) Biochemistry 54: 6423-6433

Released	2015-10-14
Method	X-RAY DIFFRACTION 2.397 Å
Organisms	Alteromonas sp.
Macromolecule	OPAA organophosphate prolidase anhydrolase (protein)
Unique Ligands	BA, GOL, M44, MN

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4ZWU	Download File View File

Crystal structure of organophosphate anhydrolase/prolidase mutant Y212F, V342L, I215Y

Daczkowski, C.M., Pegan, S.D., Harvey, S.P.

(2015) Biochemistry 54: 6423-6433

Released	2015-10-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Alteromonas sp.
Macromolecule	ORGANOPHOSPHATE ANHYDROLASE/PROLIDASE (protein)
Unique Ligands	BA, GOA, GOL, MN

1 to 25 of 72 Structures

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