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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Swamy, G.Y.S.K."

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Search Summary

This query matches 16 Structures.

Refinements

Structure Determination Methodology

experimental (16)

Scientific Name of Source Organism

	Enterobacter cloacae (4)
	Escherichia coli (4)
	Escherichia coli MS 115-1 (3)
	Pseudomonas aeruginosa (3)
	Stenotrophomonas maltophilia (1)
	Thauera sp. K11 (1)

Taxonomy

Bacteria (16)

Experimental Method

	X-RAY DIFFRACTION (14)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

	Protein (16)
	RNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (8)
	2.0 - 2.5 (2)
	2.5 - 3.0 (2)

Release Date

	2015 - 2019 (5)
	2020 - 2024 (11)

Enzyme Classification Name

	Hydrolases (5)
	Transferases (4)

Symmetry Type

	Cyclic (8)
	Dihedral (4)
	Asymmetric (4)

AllSelected

1 to 16 of 16 Structures

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6P7O	Download File View File

Structure of E. coli MS115-1 NucC, Apo form

Ye, Q., Lau, R.K., Berg, K.R., Corbett, K.D.

(2020) Mol Cell 77: 723

Released	2019-12-25
Method	X-RAY DIFFRACTION 1.752 Å
Organisms	Escherichia coli MS 115-1
Macromolecule	E. coli MS115-1 NucC (protein)
Unique Ligands	CL, MG, P6G, PGE

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6P7P	Download File View File

Structure of E. coli MS115-1 NucC, cAAA-bound form

Ye, Q., Lau, R.K., Berg, K.R., Corbett, K.D.

(2020) Mol Cell 77: 723

Released	2019-12-25
Method	X-RAY DIFFRACTION 1.665 Å
Organisms	Escherichia coli MS 115-1
Macromolecule	E. coli MS115-1 NucC 2-241 (protein) Cyclic tri-AMP (5'-3' linked) (nucleic acid)
Unique Ligands	CL

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6P7Q	Download File View File

Structure of E. coli MS115-1 NucC, 5'-pApA bound form

Ye, Q., Lau, R.K., Berg, K.R., Corbett, K.D.

(2020) Mol Cell 77: 723

Released	2019-12-25
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Escherichia coli MS 115-1
Macromolecule	E. coli MS115-1 NucC (protein) RNA (5'-R(PAPA)-3') (nucleic acid)
Unique Ligands	CL

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6P8O	Download File View File

Structure of P. aeruginosa ATCC27853 HORMA2-deltaC

Ye, Q., Corbett, K.D., Lau, R.K.

(2020) Mol Cell 77: 709

Released	2019-12-25
Method	X-RAY DIFFRACTION 1.604 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	HORMA domain containing protein (protein)
Unique Ligands	CL, NI

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6Q1H	Download File View File

Structure of P. aeruginosa ATCC27853 NucC, cAAA-bound form

Ye, Q., Lau, R.K., Corbett, K.D.

(2020) Mol Cell 77: 723

Released	2019-12-25
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Bacterial protein ORF C62 (protein) RNA (5'-R(PAPAP*A)-3') (nucleic acid)

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7T2S	Download File View File

Structure of E. coli upec-117 Cap18 3'-5' exonuclease

Liang, Q., Richey, S.T., Ye, Q., Lau, R.K., Corbett, K.D.

(2022) Protein Sci 31: e4374-e4374

Released	2022-07-20
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Escherichia coli
Macromolecule	3'-5' exonuclease (protein)
Unique Ligands	ACT

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7T5T	Download File View File

Structure of Thauera sp. K11 CapP

Lau, R.K., Corbett, K.D.

(2022) EMBO J 41: e111540-e111540

Released	2022-09-14
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Thauera sp. K11
Macromolecule	CapP toxin (protein)
Unique Ligands	NHE, SO4, ZN

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7T5U	Download File View File

Structure of E. coli MS115-1 CapH N-terminal domain

Lau, R.K., Corbett, K.D.

(2022) EMBO J 41: e111540-e111540

Released	2022-09-14
Method	X-RAY DIFFRACTION 1.02 Å
Organisms	Escherichia coli
Macromolecule	Helix-turn-helix domain-containing protein (protein)
Unique Ligands	SO4

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7T5V	Download File View File

Structure of E. coli CapH C-terminal domain I99M mutant

Lau, R.K., Corbett, K.D.

(2022) EMBO J 41: e111540-e111540

Released	2022-09-14
Method	X-RAY DIFFRACTION 1.26 Å
Organisms	Escherichia coli
Macromolecule	Helix-turn-helix domain-containing protein (protein)

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7T5W	Download File View File

Structure of E. coli CapH C-terminal domain

Lau, R.K., Corbett, K.D.

(2022) EMBO J 41: e111540-e111540

Released	2022-09-14
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Escherichia coli
Macromolecule	Helix-turn-helix domain-containing protein (protein)

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7TB5	Download File View File

Structure of P. aeruginosa PA17 CapW

Blankenchip, C.L., Nguyen, J.V., Lau, R.K., Ye, Q., Corbett, K.D.

(2022) Nucleic Acids Res 50: 5239-5250

Released	2022-01-19
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	WYL domain-containing protein (protein)
Unique Ligands	SO4

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7TB6	Download File View File

Structure of S. maltophilia CapW

Blankenchip, C.L., Nguyen, J.V., Lau, R.K., Ye, Q., Corbett, K.D.

(2022) Nucleic Acids Res 50: 5239-5250

Released	2022-01-19
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Stenotrophomonas maltophilia
Macromolecule	S. maltophilia CapW (protein)
Unique Ligands	SO4

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7TO3	Download File View File

Structure of Enterobacter cloacae Cap2-CdnD02 2:2 complex

Gu, Y., Ye, Q., Ledvina, H.E., Quan, Y., Lau, R.K., Zhou, H., Whiteley, A.T., Corbett, K.D.

(2023) Nature 616: 319-325

Released	2023-01-11
Method	ELECTRON MICROSCOPY 2.74 Å
Organisms	Enterobacter cloacae
Macromolecule	Cap2 (protein) Cyclic AMP-AMP-GMP synthase (protein)
Unique Ligands	ADP, AMP, ATP, MG

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7TQD	Download File View File

Structure of Enterobacter cloacae Cap2-CdnD02 2:1 complex

Gu, Y., Ye, Q., Ledvina, H.E., Quan, Y., Lau, R.K., Zhou, H., Whiteley, A.T., Corbett, K.D.

(2023) Nature 616: 319-325

Released	2023-01-11
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Enterobacter cloacae
Macromolecule	Cap2 (protein) Cyclic AMP-AMP-GMP synthase (protein)
Unique Ligands	ADP, AMP, ATP, MG

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7TSQ	Download File View File

Structure of Enterobacter cloacae Cap2 bound to CdnD02 C-terminus, AMP state

Ye, Q., Gu, Y., Ledvina, H.E., Quan, Y., Lau, R.K., Zhou, H., Whiteley, A.T., Corbett, K.D.

(2023) Nature 616: 319-325

Released	2023-01-11
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Enterobacter cloacae
Macromolecule	Cap2 (protein) Cyclic AMP-AMP-GMP synthase (protein)
Unique Ligands	AMP, MG

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7TSX	Download File View File

Structure of Enterobacter cloacae Cap2 bound to CdnD02 C-terminus, Apo state

Ye, Q., Gu, Y., Ledvina, H.E., Quan, Y., Lau, R.K., Zhou, H., Whiteley, A.T., Corbett, K.D.

(2023) Nature 616: 319-325

Released	2023-01-11
Method	X-RAY DIFFRACTION 1.77 Å
Organisms	Enterobacter cloacae
Macromolecule	Cap2 (protein) Cyclic AMP-AMP-GMP synthase (protein)

1 to 16 of 16 Structures

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