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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Cheng, B."

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Search Summary

This query matches 30 Structures.

Refinements

Structure Determination Methodology

experimental (30)

Scientific Name of Source Organism

	Homo sapiens (11)
	Salmonella enterica subsp. enterica serovar Cubana str. 76814 (8)
	Mycobacterium tuberculosis H37Rv (3)
	synthetic construct (3)
	Escherichia coli DH1 (2)
	Staphylococcus aureus (2)
	Chersonesometrus fulvipes (1)
	Escherichia coli K-12 (1)
	Mycobacterium tuberculosis CDC1551 (1)
	Streptococcus pyogenes (1)

More...

Taxonomy

	Bacteria (18)
	Eukaryota (12)
	other sequences (3)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (29)
	SOLUTION NMR (1)

Polymer Entity Type

	Protein (30)
	DNA (2)

Refinement Resolution (Å)

	1.5 - 2.0 (7)
	2.0 - 2.5 (16)
	2.5 - 3.0 (6)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (2)
	2010 - 2014 (2)
	2015 - 2019 (11)
	2020 - 2024 (11)

Enzyme Classification Name

	Ligases (10)
	Hydrolases (5)
	Isomerases (4)
	Oxidoreductases (4)
	Transferases (2)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (17)
	Cyclic (13)

SCOP Classification

	Alpha and beta proteins (a/b) (7)
	Artifacts (8)
	Alpha and beta proteins (a+b) (6)
	Small proteins (6)
	Multi-domain proteins (alpha and beta) (2)
	All alpha proteins (1)
	All beta proteins (1)
	Peptides (1)

AllSelected

1 to 25 of 30 Structures

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1HP9	Download File View File

kappa-Hefutoxins: a novel Class of Potassium Channel Toxins from Scorpion venom

Srinivasan, K.N., Sivaraja, V., Huys, I., Sasaki, T., Cheng, B., Kumar, T.K.S., Sato, K., Tytgat, J., Yu, C., Brian Chia, C.S., Ranganathan, S., Bowie, J.H., Kini, R.M., Gopalakrishnakone, P.

(2002) J Biol Chem 277: 30040-30047

Released	2002-08-28
Method	SOLUTION NMR
Organisms	Chersonesometrus fulvipes
Macromolecule	kappa-hefutoxin 1 (protein)

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1I5K	Download File View File

STRUCTURE AND BINDING DETERMINANTS OF THE RECOMBINANT KRINGLE-2 DOMAIN OF HUMAN PLASMINOGEN TO AN INTERNAL PEPTIDE FROM A GROUP A STREPTOCOCCAL SURFACE PROTEIN

Rios-Steiner, J.L., Schenone, M., Mochalkin, I., Tulinsky, A., Castellino, F.J.

(2001) J Mol Biol 308: 705-719

Released	2001-08-01
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens Streptococcus pyogenes
Macromolecule	M PROTEIN (protein) PLASMINOGEN (protein)

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1KIV	Download File View File

RECOMBINANT KRINGLE IV-10/M66 VARIANT OF HUMAN APOLIPOPROTEIN(A)

Mochalkin, I., Tulinsky, A., Scanu, A.

(1999) Biochemistry 38: 1990-1998

Released	1999-05-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	APOLIPOPROTEIN A (protein)

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3KIV	Download File View File

RECOMBINANT KRINGLE IV-10/M66 VARIANT OF HUMAN APOLIPOPROTEIN(A)

Mochalkin, I., Tulinsky, A., Scanu, A.

(1999) Biochemistry 38: 1990-1998

Released	1999-05-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	APOLIPOPROTEIN (protein)
Unique Ligands	ACA

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3PWT	Download File View File

Crystal structure of mutant E.coli topoisomerase IA

Zhang, Z., Bokun, C., Tse-Dinh, Y.-C.

To be published

Released	2010-12-29
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli K-12
Macromolecule	DNA topoisomerase (protein)
Unique Ligands	SO4

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3PX7	Download File View File

Crystal Structure of covalent complex of topoisomerase 1A with substrate

Zhang, Z., Tse-dinh, Y.C., Cheng, B.

To be published

Released	2011-04-20
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli DH1
Macromolecule	DNA topoisomerase (protein) DNA 5'-D(AAPTPGPCPGPCPT)-3' (nucleic acid) DNA 5'-D(TPTPGPGP*G)-3' (nucleic acid)
Unique Ligands	HG

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4KIV	Download File View File

RECOMBINANT KRINGLE IV-10/W72R MUTANT OF HUMAN APOLIPOPROTEIN(A)

Mochalkin, I., Tulinsky, A., Scanu, A.

(1999) Biochemistry 38: 1990-1998

Released	1999-05-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	APOLIPOPROTEIN (protein)

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4RUL	Download File View File

Crystal structure of full-length E.Coli topoisomerase I in complex with ssDNA

Tan, K., Chen, B., Tse-Dinh, Y.C.

(2015) Nucleic Acids Res 43: 11031-11046

Released	2015-11-04
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli DH1 synthetic construct
Macromolecule	DNA topoisomerase 1 (protein) single strand DNA (nucleic acid)
Unique Ligands	GOL, SO4, ZN

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5CVC	Download File View File

Structure of maize serine racemase

Song, Y., Zou, L., Fan, J.

(2016) Acta Crystallogr F Struct Biol Commun 72: 165-171

Released	2016-03-16
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Zea mays
Macromolecule	Serine racemase (protein)
Unique Ligands	MG, PLP

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5D5H	Download File View File

Crystal structure of Mycobacterium tuberculosis Topoisomerase I

Tan, K., Cheng, B., Tse-Dinh, Y.C.

(2016) J Mol Biol 428: 182-193

Released	2015-12-16
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	DNA topoisomerase 1 (protein)
Unique Ligands	ACT, GOL, SO4

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5HPG	Download File View File

STRUCTURE AND LIGAND DETERMINANTS OF THE RECOMBINANT KRINGLE 5 DOMAIN OF HUMAN PLASMINOGEN

Tulinsky, A., Mochalkin, I., Castellino, F.J.

(1998) Biochemistry 37: 3258-3271

Released	1998-03-25
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Homo sapiens
Macromolecule	PLASMINOGEN (protein)

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5OEL	Download File View File

Mycobacterium tuberculosis DprE1 mutant Y314C in complex with TCA1

Futterer, K., Batt, S.M., Besra, G.S.

(2017) Angew Chem Int Ed Engl 56: 13011-13015

Released	2018-05-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	Decaprenylphosphoryl-beta-D-ribose oxidase (protein)
Unique Ligands	1W6, FAD

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5OEP	Download File View File

Mycobacterium tuberculosis DprE1 in complex with inhibitor TCA481

Futterer, K., Batt, S.M., Besra, G.S.

(2017) Angew Chem Int Ed Engl 56: 13011-13015

Released	2018-05-16
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Decaprenylphosphoryl-beta-D-ribose oxidase (protein)
Unique Ligands	9T2, FAD, IMD

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5OEQ	Download File View File

Mycobacterium tuberculosis DprE1 in complex with inhibitor TCA020

Futterer, K., Batt, S.M., Besra, G.S.

(2017) Angew Chem Int Ed Engl 56: 13011-13015

Released	2018-05-16
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Decaprenylphosphoryl-beta-D-ribose oxidase (protein)
Unique Ligands	FAD, IMD, P95

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5W0C	Download File View File

Cytochrome P450 (CYP) 2C9 TCA007 Inhibitor Complex

Johnson, E.F., Hsu, M.-H.

(2017) Angew Chem Int Ed Engl 56: 13011-13015

Released	2017-09-13
Method	X-RAY DIFFRACTION 2.001 Å
Organisms	Homo sapiens
Macromolecule	Cytochrome P450 2C9 (protein)
Unique Ligands	9W6, GOL, HEM

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5ZAN	Download File View File

Crystal Structure of Aurora-A in complex with a new Quinazoline inhibitor

Cheng, B., Lu, G., Zhou, H.

To be published

Released	2019-02-13
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Homo sapiens
Macromolecule	Aurora kinase A (protein)
Unique Ligands	9A6

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5ZNJ	Download File View File

Crystal structure of a bacterial ProRS with ligands

Cheng, B., Yu, Y., Zhou, H.

(2022) J Med Chem 65: 15840-15855

Released	2019-05-29
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Staphylococcus aureus
Macromolecule	Proline--tRNA ligase (protein)
Unique Ligands	ANP, GOL, HFG, MG, PO4

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5ZNK	Download File View File

Crystal structure of a bacterial ProRS with ligands

Cheng, B., Yu, Y., Zhou, H.

(2022) J Med Chem 65: 15840-15855

Released	2019-05-29
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Staphylococcus aureus
Macromolecule	Proline--tRNA ligase (protein)
Unique Ligands	9G3, ANP, GOL, MG

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6J71	Download File View File

HuA21-scFv in complex with the extracellular domain(ECD) of HER2

Wang, Z., Guo, G., Cheng, B., Zhu, Z., Niu, L., Zhang, H.

(2019) Acta Crystallogr D Struct Biol 75: 554-563

Released	2019-02-27
Method	X-RAY DIFFRACTION 2.918 Å
Organisms	Homo sapiens
Macromolecule	Receptor tyrosine-protein kinase erbB-2 (protein) anti-HER2 humanized antibody HuA21 (protein)
Unique Ligands	BMA
Unique branched monosaccharides	BMA, NAG

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6L2P	Download File View File

Threonyl-tRNA synthetase from Salmonella enterica in the apo form

Guo, J., Chen, B., Zhou, H.

(2019) Eur J Med Chem 187: 111941-111941

Released	2020-01-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Salmonella enterica subsp. enterica serovar Cubana str. 76814
Macromolecule	Threonine--tRNA ligase (protein)
Unique Ligands	ZN

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6L2Q	Download File View File

Threonyl-tRNA synthetase from Salmonella enterica in complex with an inhibitor

Guo, J., Chen, B., Zhou, H.

(2019) Eur J Med Chem 187: 111941-111941

Released	2020-01-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Salmonella enterica subsp. enterica serovar Cubana str. 76814
Macromolecule	Threonine--tRNA ligase (protein)
Unique Ligands	E4O, EDO, ZN

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6WM1	Download File View File

Crystal structure of the Grb2 SH2 domain in complex with a tripeptide: Ac-pY-Ac6c-N-phenylpropyl

Martin, S.F., Clements, J.H.

(2020) Eur J Med Chem 208: 112771-112771

Released	2020-09-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	ACE-PTR-02K-ASN-PRA (protein) Growth factor receptor-bound protein 2 (protein)
Unique Ligands	CA, CL, GOL

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6WO2	Download File View File

Crystal Structure of the Grb2 SH2 Domain in Complex with a Tripeptide: Ac-pY-Ac6c-N-isohexyl

Martin, S.F., Clements, J.H.

(2020) Eur J Med Chem 208: 112771-112771

Released	2020-09-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	ACE-PTR-02K-ASN-U67 (protein) Growth factor receptor-bound protein 2 (protein)
Unique Ligands	CA, IPA, NA

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7CBG	Download File View File

Crystal structure of threonyl-tRNA synthetase (ThrRS) from Salmonella enterica in complex with an inhibitor

Guo, J., Chen, B., Zhou, H.

(2020) Eur J Med Chem 207: 112848-112848

Released	2020-10-07
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Salmonella enterica subsp. enterica serovar Cubana str. 76814
Macromolecule	Threonine--tRNA ligase (protein)
Unique Ligands	FQL, ZN

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7CBH	Download File View File

Crystal structure of threonyl-tRNA synthetase (ThrRS) from Salmonella enterica in complex with an inhibitor

Guo, J., Chen, B., Zhou, H.

(2020) Eur J Med Chem 207: 112848-112848

Released	2020-10-07
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Salmonella enterica subsp. enterica serovar Cubana str. 76814
Macromolecule	Threonine--tRNA ligase (protein)
Unique Ligands	FQR, ZN

1 to 25 of 30 Structures

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