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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Karasawa, M."

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Search Summary

This query matches 16 Structures.

Refinements

Structure Determination Methodology

experimental (16)

Scientific Name of Source Organism

	Priestia megaterium (12)
	Pseudomonas protegens Pf-5 (2)
	Escherichia phage Mu (1)
	Priestia megaterium NBRC 15308 = ATCC 14581 (1)

Taxonomy

	Bacteria (15)
	Duplodnaviria (1)

Experimental Method

X-RAY DIFFRACTION (16)

Polymer Entity Type

Protein (16)

Refinement Resolution (Å)

	1.0 - 1.5 (5)
	1.5 - 2.0 (6)
	2.0 - 2.5 (3)
	3.0 - 3.5 (2)

Release Date

	2015 - 2019 (2)
	2020 - 2024 (14)

Enzyme Classification Name

Oxidoreductases (13)

Symmetry Type

	Asymmetric (14)
	Cyclic (2)

SCOP Classification

All alpha proteins (4)

AllSelected

1 to 16 of 16 Structures

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5ZIS	Download File View File

Crystal structure of Mn-ProtoporphyrinIX-reconstituted P450BM3

Omura, K., Aiba, Y., Onoda, H., Sugimoto, H., Shoji, O., Watanabe, Y.

(2018) Chem Commun (Camb) 54: 7892-7895

Released	2018-08-15
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Priestia megaterium NBRC 15308 = ATCC 14581
Macromolecule	Bifunctional cytochrome P450/NADPH--P450 reductase (protein)
Unique Ligands	MNH

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5ZLH	Download File View File

Crystal structure of Mn-ProtoporphyrinIX-reconstituted P450BM3

Omura, K., Aiba, Y., Onoda, H., Sugimoto, H., Shoji, O., Watanabe, Y.

(2018) Chem Commun (Camb) 54: 7892-7895

Released	2018-08-15
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Priestia megaterium
Macromolecule	Bifunctional cytochrome P450/NADPH--P450 reductase (protein)
Unique Ligands	MNH

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6K3Q	Download File View File

Crystal Structure of P450BM3 with N-(3-cyclohexylpropanoyl)-L-prolyl-L-phenylalanine

Shoji, O., Yonemura, K.

(2020) ACS Catal 10: 9136-9144

Released	2020-05-27
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Priestia megaterium
Macromolecule	Bifunctional cytochrome P450/NADPH--P450 reductase (protein)
Unique Ligands	D0F, DMS, HEM

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6L1A	Download File View File

Crystal Structure of P450BM3 with N-enanthoyl-L-prolyl-L-phenylalanine

Shoji, O., Yonemura, K.

(2020) ACS Catal 10: 9136-9144

Released	2020-09-30
Method	X-RAY DIFFRACTION 1.84 Å
Organisms	Priestia megaterium
Macromolecule	Bifunctional cytochrome P450/NADPH--P450 reductase (protein)
Unique Ligands	DMS, GOL, HEM, OPF

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6L1B	Download File View File

Crystal Structure of P450BM3 with N-(3-cyclopentylpropanoyl)-L-pipecolyl-L-phenylalanine

Shoji, O., Yonemura, K.

(2020) ACS Catal 10: 9136-9144

Released	2020-09-30
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Priestia megaterium
Macromolecule	Bifunctional cytochrome P450/NADPH--P450 reductase (protein)
Unique Ligands	DMS, GOL, HEM, YIC

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7WY1	Download File View File

Structure of the Oxomolybdenum Mesoporphyrin IX-Reconstituted CYP102A1 Haem Domain with N-Enanthyl-L-Prolyl-L-Phenylalanine in complex with Styerene

Suzuki, K., Stanfield, J.K., Shisaka, Y., Omura, K., Kasai, C., Sugimoto, H., Shoji, O.

(2023) Angew Chem Int Ed Engl 62: e202215706-e202215706

Released	2023-01-04
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Priestia megaterium
Macromolecule	Bifunctional cytochrome P450/NADPH--P450 reductase (protein)
Unique Ligands	D0L, MI9, SOR, SYN

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7WY2	Download File View File

Structure of the Oxomolybdenum Mesoporphyrin IX-Reconstituted CYP102A1 F87A Mutant Haem Domain with N-Enanthyl-L-Prolyl-L-Phenylalanine in complex with Styrene

Suzuki, K., Stanfield, J.K., Shisaka, Y., Omura, K., Kasai, C., Sugimoto, H., Shoji, O.

(2023) Angew Chem Int Ed Engl 62: e202215706-e202215706

Released	2023-01-04
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Priestia megaterium
Macromolecule	Bifunctional cytochrome P450/NADPH--P450 reductase (protein)
Unique Ligands	CL, D0L, GOL, MI9, SYN

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7WY3	Download File View File

Structure of the Oxomolybdenum Mesoporphyrin IX-Reconstituted CYP102A1 F87V Mutant Haem Domain with N-(5-Cyclohexyl)valeroyl-L-Phenylalanine in complex with Styrene

Suzuki, K., Stanfield, J.K., Shisaka, Y., Omura, K., Kasai, C., Sugimoto, H., Shoji, O.

(2023) Angew Chem Int Ed Engl 62: e202215706-e202215706

Released	2023-01-04
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Priestia megaterium
Macromolecule	Bifunctional cytochrome P450/NADPH--P450 reductase (protein)
Unique Ligands	CL, GKX, GOL, MI9, SYN

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7WY4	Download File View File

Structure of the CYP102A1 F87A Haem Domain with N-Enanthyl-L-Prolyl-L-Phenylalanine in complex with Styrene

Suzuki, K., Stanfield, J.K., Shisaka, Y., Omura, K., Kasai, C., Sugimoto, H., Shoji, O.

(2023) Angew Chem Int Ed Engl 62: e202215706-e202215706

Released	2023-01-04
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Priestia megaterium
Macromolecule	Bifunctional cytochrome P450/NADPH--P450 reductase (protein)
Unique Ligands	CL, D0L, GOL, HEM, SYN

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7XZK	Download File View File

Crystal Structure of P450BM3 with N-(3-cyclohexylpropanoyl)-L-pipecolyl-L-phenylalanine

Shoji, O., Yonemura, K.

To be published

Released	2023-06-07
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Priestia megaterium
Macromolecule	Bifunctional cytochrome P450/NADPH--P450 reductase (protein)
Unique Ligands	HEM, I8F

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8JU3	Download File View File

Mu phage tail fiber

Yamashita, E., Takeda, S.

(2024) Virology 593: 110017-110017

Released	2024-02-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia phage Mu
Macromolecule	Tail fiber protein S,Tail fiber protein S' (protein)

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8KI0	Download File View File

Crystal structure of the hemophore HasA from Pseudomonas protegens Pf-5 capturing Fe-tetraphenylporphyrin

Shisaka, Y., Inaba, H., Sugimoto, H., Shoji, O.

(2024) RSC Adv 14: 8829-8836

Released	2024-03-27
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Pseudomonas protegens Pf-5
Macromolecule	Heme acquisition protein HasAp (protein)
Unique Ligands	GOL, MQP, NA, NHE

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8KI1	Download File View File

Crystal structure of the holo form of the hemophore HasA from Pseudomonas protegens Pf-5

Shisaka, Y., Inaba, H., Sugimoto, H., Shoji, O.

(2024) RSC Adv 14: 8829-8836

Released	2024-03-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas protegens Pf-5
Macromolecule	Heme acquisition protein HasAp (protein)
Unique Ligands	GOL, HEM, PO4

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9ISS	Download File View File

Crystal Structure of Cytochrome P450BM3 III-10C1 Mutant Heme Domain with N-Decanoyl-L-Homoserine Lactone

Yokoyama, Y., Shoji, O., Sugimoto, H.

(2024) ChemCatChem

Released	2024-12-04
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Priestia megaterium
Macromolecule	Bifunctional cytochrome P450/NADPH--P450 reductase (protein)
Unique Ligands	DMS, GOL, HEM, HL0

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9IST	Download File View File

Crystal Structure of Cytochrome P450BM3 VI-18A12 Mutant Heme Domain with N-Decanoyl-L-Homoserine Lactone

Yokoyama, Y., Sugimoto, H., Shoji, O.

(2024) ChemCatChem

Released	2024-12-04
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Priestia megaterium
Macromolecule	Bifunctional cytochrome P450/NADPH--P450 reductase (protein)
Unique Ligands	DMS, GOL, HEM, HL0

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9ISU	Download File View File

Crystal Structure of Cytochrome P450BM3 V-19A14 Mutant Heme Domain with N-Decanoyl-L-Homoserine Lactone

Yokoyama, Y., Sugimoto, H., Shoji, O.

(2024) ChemCatChem

Released	2024-12-04
Method	X-RAY DIFFRACTION 1.32 Å
Organisms	Priestia megaterium
Macromolecule	Bifunctional cytochrome P450/NADPH--P450 reductase (protein)
Unique Ligands	DMS, GOL, HEM, HL0

1 to 16 of 16 Structures

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