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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Shima, T."

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Sus scrofa (4)
	Dictyostelium discoideum (2)
	Kluyveromyces marxianus (2)
	Drosophila melanogaster (1)

Taxonomy

Eukaryota (9)

Experimental Method

	ELECTRON MICROSCOPY (4)
	X-RAY DIFFRACTION (4)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	2.5 - 3.0 (3)
	3.5 - 4.0 (1)
	> 4.5 (4)

Release Date

	2010 - 2014 (5)
	2015 - 2019 (4)

Enzyme Classification Name

	Hydrolases (4)
	Transferases (1)

Symmetry Type

	Asymmetric (4)
	Helical (4)
	Cyclic (1)

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1 to 9 of 9 Structures

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2LPU	Download File View File

Solution structures of KmAtg10

Yamaguchi, M., Noda, N.N., Yamamoto, H., Shima, T., Kumeta, H., Kobashigawa, Y., Akada, R., Ohsumi, Y., Inagaki, F.

(2012) Structure 20: 1244-1254

Released	2012-08-01
Method	SOLUTION NMR
Organisms	Kluyveromyces marxianus
Macromolecule	KmAtg10 (protein)

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3I2W	Download File View File

Crystal structure of EFC/F-BAR domain of Drosophila Syndapin/PACSIN

Edeling, M.A., Owen, D.J., Traub, L.M.

(2009) PLoS One 4: e8150-e8150

Released	2010-03-02
Method	X-RAY DIFFRACTION 2.67 Å
Organisms	Drosophila melanogaster
Macromolecule	Syndapin (protein)
Unique Ligands	GOL, NA

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3VKG	Download File View File

X-ray structure of an MTBD truncation mutant of dynein motor domain

Kon, T., Oyama, T., Shimo-Kon, R., Suto, K., Kurisu, G.

(2012) Nature 484: 345-350

Released	2012-03-14
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Dictyostelium discoideum
Macromolecule	Dynein heavy chain, cytoplasmic (protein)
Unique Ligands	ADP, MG, SPM

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3VKH	Download File View File

X-ray structure of a functional full-length dynein motor domain

Kon, T., Oyama, T., Shimo-Kon, R., Suto, K., Kurisu, G.

(2012) Nature 484: 345-350

Released	2012-03-14
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Dictyostelium discoideum
Macromolecule	Dynein heavy chain, cytoplasmic (protein)
Unique Ligands	ADP

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3VQI	Download File View File

Crystal structure of Kluyveromyces marxianus Atg5

Yamaguchi, M., Noda, N.N., Yamamoto, H., Shima, T., Kumeta, H., Kobashigawa, Y., Akada, R., Ohsumi, Y., Inagaki, F.

(2012) Structure 20: 1244-1254

Released	2012-08-01
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Kluyveromyces marxianus
Macromolecule	Atg5 (protein)
Unique Ligands	EPE, SO4

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5XXT	Download File View File

GDP-microtubule complexed with nucleotide-free KIF5C

Morikawa, M., Shigematsu, H., Nitta, R., Hirokawa, N.

(2018) J Cell Biol 217: 4164-4183

Released	2018-10-10
Method	ELECTRON MICROSCOPY 5.35 Å
Organisms	Sus scrofa
Macromolecule	Tubulin alpha-1A chain (protein) Tubulin beta chain (protein)
Unique Ligands	GDP, GTP, MG

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5XXV	Download File View File

GDP-microtubule complexed with KIF5C in AMPPNP state

Morikawa, M., Shigematsu, H., Nitta, R., Hirokawa, N.

(2018) J Cell Biol 217: 4164-4183

Released	2018-10-10
Method	ELECTRON MICROSCOPY 6.46 Å
Organisms	Sus scrofa
Macromolecule	Tubulin alpha-1A chain (protein) Tubulin beta chain (protein)
Unique Ligands	GDP, GTP, MG

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5XXW	Download File View File

GDP-microtubule complexed with KIF5C in ATP state

Morikawa, M., Shigematsu, H., Nitta, R., Hirokawa, N.

(2018) J Cell Biol 217: 4164-4183

Released	2018-10-10
Method	ELECTRON MICROSCOPY 6 Å
Organisms	Sus scrofa
Macromolecule	Tubulin alpha-1A chain (protein) Tubulin beta chain (protein)
Unique Ligands	GDP, GTP, MG

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5XXX	Download File View File

GMPCPP-microtubule complexed with nucleotide-free KIF5C

Morikawa, M., Shigematsu, H., Nitta, R., Hirokawa, N.

(2018) J Cell Biol 217: 4164-4183

Released	2018-10-10
Method	ELECTRON MICROSCOPY 6.43 Å
Organisms	Sus scrofa
Macromolecule	Tubulin alpha-1A chain (protein) Tubulin beta chain (protein)
Unique Ligands	G2P, GTP, MG

1 to 9 of 9 Structures

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