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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Wu, G."

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Search Summary

This query matches 18 Structures.

Refinements

Structure Determination Methodology

experimental (18)

Scientific Name of Source Organism

	Homo sapiens (5)
	synthetic construct (2)
	Bacillus subtilis (1)
	Daboia russelii pulchella (1)
	Escherichia coli (1)
	Ostrinia furnacalis (1)
	Peptostreptococcus anaerobius (1)
	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S (1)
	Serratia marcescens (1)
	Staphylococcus aureus (1)

More...

Taxonomy

	Eukaryota (8)
	Bacteria (7)
	other sequences (2)

Experimental Method

	X-RAY DIFFRACTION (12)
	SOLUTION NMR (6)

Polymer Entity Type

	Protein (10)
	DNA (8)
	RNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (5)
	2.5 - 3.0 (4)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (3)
	2010 - 2014 (4)
	2015 - 2019 (1)
	2020 - 2024 (9)

Enzyme Classification Name

	Hydrolases (4)
	Ligases (1)
	Oxidoreductases (1)

Symmetry Type

	Cyclic (8)
	Asymmetric (3)
	Dihedral (1)

SCOP Classification

	All alpha proteins (5)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 18 of 18 Structures

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1JUM	Download File View File

Crystal structure of the multidrug binding transcriptional repressor QacR bound to the natural drug berberine

Schumacher, M.A., Miller, M.C., Grkovic, S., Brown, M.H., Skurray, R.A., Brennan, R.G.

(2001) Science 294: 2158-2163

Released	2001-12-12
Method	X-RAY DIFFRACTION 2.98 Å
Organisms	Staphylococcus aureus
Macromolecule	HYPOTHETICAL TRANSCRIPTIONAL REGULATOR IN QACA 5'REGION (protein)
Unique Ligands	BER, SO4

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2QVD	Download File View File

Identification of a potent anti-inflammatory agent from the natural extract of plant Cardiospermun helicacabum: Crystal structure of the complex of phospholipase A2 with Benzo(g)-1,3-benzodioxolo(5,6-a)quinolizinium, 5,6-dihydro-9,10-dimethoxy at 1.93 A resolution

Kumar, S., Chandra, D.N., Singh, N., Jithesh, O., Sharma, S., Haridas, M., Singh, T.P.

(2011) Biochim Biophys Acta 1814: 657-663

Released	2007-08-21
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Daboia russelii pulchella
Macromolecule	Phospholipase A2 VRV-PL-VIIIa (protein)
Unique Ligands	BER

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3BTI	Download File View File

crystal structure of QacR(E58Q) bound to berberine

Schumacher, M.A., Schuman, J.T., Brennan, R.G.

(2008) Biochemistry 47: 8122-8129

Released	2008-08-12
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Staphylococcus aureus subsp. aureus Mu50
Macromolecule	HTH-type transcriptional regulator qacR (protein)
Unique Ligands	BER, SO4

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3D6Y	Download File View File

Crystal structure of R275E mutant of BMRR bound to DNA and berberine

Newberry, K.J., Brennan, R.G.

(2008) J Biol Chem 283: 26795-26804

Released	2008-08-26
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Bacillus subtilis synthetic construct
Macromolecule	Multidrug-efflux transporter 1 regulator (protein) BMR promoter DNA (nucleic acid)
Unique Ligands	BER, GOL

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3NP6	Download File View File

The crystal structure of Berberine bound to DNA d(CGTACG)

Ferraroni, M., Bazzicalupi, C., Gratteri, P., Bilia, A.R.

(2011) Chem Commun (Camb) 47: 4917-4919

Released	2011-05-04
Method	X-RAY DIFFRACTION 2.3 Å
Macromolecule	5'-D(CPGPTPAPCPG)-3' (nucleic acid)
Unique Ligands	BER, CA

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3R6R	Download File View File

Structure of the complex of an intramolecular human telomeric DNA with Berberine formed in K+ solution

Ferraroni, M., Bazzicalupi, C., Gratteri, P., Bilia, A.R.

(2013) Nucleic Acids Res 41: 632-638

Released	2012-02-29
Method	X-RAY DIFFRACTION 2.4 Å
Macromolecule	DNA (22-mer) (nucleic acid)
Unique Ligands	BER, K

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3VW2	Download File View File

Crystal Strucuture of The Berberine-bound Form of RamR (Transcriptional Regurator of TetR Family) from Salmonella Typhimurium

Sakurai, K., Nikaido, E., Nakashima, R., Yamasaki, S., Yamaguchi, A., Nishino, K.

(2013) Nat Commun 4: 2078-2078

Released	2013-07-03
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Macromolecule	Putative regulatory protein (protein)
Unique Ligands	BER, SO4

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4DBK	Download File View File

Crystal structure of porcine pancreatic phospholipase A2 complexed with berberine

Naveen, C.D., Abhilash, J., Prasanth, G.K., Sadasivan, C., Haridas, M.

To be published

Released	2012-01-25
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Sus scrofa
Macromolecule	Phospholipase A2, major isoenzyme (protein)
Unique Ligands	BER, CA

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5Y0V	Download File View File

Crystal Structure of insect beta-N-acetyl-D-hexosaminidase OfHex1 complexed with berberine

Duan, Y.W., Liu, T., Tang, J.Y., Li, M., Yang, Q.

(2018) J Biol Chem 293: 15429-15438

Released	2018-01-24
Method	X-RAY DIFFRACTION 2.423 Å
Organisms	Ostrinia furnacalis
Macromolecule	Beta-hexosaminidase (protein)
Unique Ligands	BER, NAG
Unique branched monosaccharides	NAG

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6JWD	Download File View File

structure of RET G-quadruplex in complex with berberine

Wang, F., Wang, C., Liu, Y., Lan, W.X., Li, Y.M., Wang, R.X., Cao, C.

(2020) Chem Commun (Camb) 56: 2099-2102

Released	2020-04-22
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	DNA (5'-D(GPGPGPGPCPGPGPGPGPCPGPGPGPGPCPGPGPGPGPT)-3') (nucleic acid)
Unique Ligands	BER

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7A3Y	Download File View File

RNA duplex with a cytosine bulge in complex with berberine

Podbevsek, P., Plavec, J.

(2021) Nucleic Acids Res

Released	2021-03-10
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	RNA-A chain A (nucleic acid) RNA-A chain B (nucleic acid)
Unique Ligands	BER

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7C34	Download File View File

Crystal structure of Serratia marcescens Chitinase B complexed with Berberine

Chen, L., Chen, J., Yang, Q.

(2020) J Enzyme Inhib Med Chem 35: 1937-1943

Released	2020-05-27
Method	X-RAY DIFFRACTION 1.938 Å
Organisms	Serratia marcescens
Macromolecule	Chitinase (protein)
Unique Ligands	BER

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7MSV	Download File View File

Solution Structure of Berberine Bound to a dGMP Fill-in G-Quadruplex in the PDGFR-b Promoter

Wang, K.B., Dickerhoff, J., Yang, D.

(2021) J Am Chem Soc 143: 16549-16555

Released	2021-10-20
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	DNA (5'-D(APAPGPGPGPAPGPGPGPCPGPGPCPGPGPGPAPCP*A)-3') (nucleic acid)
Unique Ligands	BER, DGP

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7N7D	Download File View File

Solution structure of the MYC promoter G-quadruplex in complex with berberine: conformer A

Dickerhoff, J., Yang, D.

(2021) J Med Chem 64: 16205-16212

Released	2021-11-03
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Myc2345 (nucleic acid)
Unique Ligands	BER

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7N7E	Download File View File

Solution structure of the MYC promoter G-quadruplex in complex with berberine: conformer B

Dickerhoff, J., Yang, D.

(2021) J Med Chem 64: 16205-16212

Released	2021-11-03
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Myc2345 (nucleic acid)
Unique Ligands	BER

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7X32	Download File View File

Crystal structure of E. coli NfsB in complex with berberine

Zhang, H., Wen, H.Y.

(2022) Acta Crystallogr D Struct Biol 78: 1273-1282

Released	2022-10-12
Method	X-RAY DIFFRACTION 1.829 Å
Organisms	Escherichia coli
Macromolecule	Dihydropteridine reductase (protein)
Unique Ligands	BER, DMS, FMN, GOL

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7X8M	Download File View File

NMR Solution Structure of the 2:1 Berberine-KRAS-G4 Complex

Wang, K.B., Liu, Y., Li, J., Xiao, C., Gu, W., Li, Y., Xia, Y.Z., Yan, T., Yang, M.H., Kong, L.Y.

(2022) Nat Commun 13: 6016-6016

Released	2022-09-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	DNA (24-MER) (nucleic acid)
Unique Ligands	BER

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7XZP	Download File View File

Formate-tetrahydrofolate ligase in complex with berberine

Fang, C.L., Zhang, Y.

(2023) BMC Biol 21: 280-280

Released	2023-06-07
Method	X-RAY DIFFRACTION 2.56 Å
Organisms	Peptostreptococcus anaerobius
Macromolecule	Formate--tetrahydrofolate ligase (protein)
Unique Ligands	BER, PRO, SO4

1 to 18 of 18 Structures

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