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232,059 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "von Loeffelholz, O."

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Search Summary

This query matches 20 Structures.

Refinements

Structure Determination Methodology

experimental (20)

Scientific Name of Source Organism

	Homo sapiens (6)
	Schizosaccharomyces pombe 972h- (6)
	Bos taurus (5)
	Corynebacterium glutamicum ATCC 13032 (2)
	Mycosarcoma maydis (2)
	Sus scrofa (2)
	Escherichia coli (1)
	Escherichia coli K-12 (1)
	Saccharolobus solfataricus (1)
	Saccharomyces cerevisiae (1)

More...

Taxonomy

	Eukaryota (17)
	Bacteria (4)
	Archaea (1)

Experimental Method

	ELECTRON MICROSCOPY (19)
	X-RAY DIFFRACTION (1)

Polymer Entity Type

	Protein (20)
	RNA (6)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (1)
	2.5 - 3.0 (1)
	3.0 - 3.5 (3)
	3.5 - 4.0 (1)
	4.0 - 4.5 (1)
	> 4.5 (12)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (11)
	2020 - 2024 (8)

Enzyme Classification Name

	Hydrolases (12)
	Translocases (2)
	Lyases (4)

Membrane Protein Annotation

	MemProtMD (2)
	OPM (2)
	PDBTM (2)
	mpstruc (2)

Symmetry Type

	Asymmetric (18)
	Cyclic (2)

SCOP Classification

Alpha and beta proteins (a+b) (1)

AllSelected

1 to 20 of 20 Structures

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3ZN8	Download File View File

Structural Basis of Signal Sequence Surveillance and Selection by the SRP-SR Complex

von Loeffelholz, O., Knoops, K., Ariosa, A., Zhang, X., Karuppasamy, M., Huard, K., Schoehn, G., Berger, I., Shan, S.O., Schaffitzel, C.

(2013) Nat Struct Mol Biol 20: 604

Released	2013-03-06
Method	ELECTRON MICROSCOPY 12 Å
Organisms	Escherichia coli Saccharolobus solfataricus Saccharomyces cerevisiae
Macromolecule	DIPEPTIDYL AMINOPEPTIDASE B (protein) SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN (protein) SIGNAL RECOGNITION PARTICLE PROTEIN (protein) SIGNAL RECOGNITION PARTICLE RECEPTOR FTSY (protein) 4.5 S RNA (nucleic acid)
Unique Ligands	MG

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5AKA	Download File View File

EM structure of ribosome-SRP-FtsY complex in closed state

von Loeffelholz, O., Jiang, Q., Ariosa, A., Karuppasamy, M., Huard, K., Berger, I., Shan, S., Schaffitzel, C.

(2015) Proc Natl Acad Sci U S A 112: 3943-3948

Released	2015-03-25
Method	ELECTRON MICROSCOPY 5.7 Å
Organisms	Escherichia coli K-12
Macromolecule	Unique protein chains: 31 Unique nucleic acid chains: 3
Unique Ligands	MG

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5M5I	Download File View File

Pseudo-atomic model of microtubule-bound S.pombe kinesin-5 motor domain in the AMPPNP state (based on cryo-electron microscopy experiment): the N-terminus conformation allows formation of a cover neck bundle.

Goulet, A., Moores, C.A., Cross, R.A.

(2016) Proc Natl Acad Sci U S A 113: E7483-E7489

Released	2016-11-30
Method	ELECTRON MICROSCOPY 9.3 Å
Organisms	Bos taurus Schizosaccharomyces pombe 972h-
Macromolecule	Kinesin-like protein cut7 (protein) Tubulin alpha-1D chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	ANP, GDP, GTP, MG, TA1

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5M5L	Download File View File

Pseudo-atomic model of microtubule-bound S. pombe kinesin-5 motor domain in the AMPPNP state (based on cryo-electron microscopy experiment): the N-terminus adopts multiple conformations

Goulet, A., Moores, C.A., Cross, R.A.

(2016) Proc Natl Acad Sci U S A 113: E7483-E7489

Released	2016-11-30
Method	ELECTRON MICROSCOPY 9.3 Å
Organisms	Bos taurus Schizosaccharomyces pombe 972h-
Macromolecule	Kinesin-like protein cut7 (protein) Tubulin alpha-1D chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	ANP, GDP, GTP, MG, TA1

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5M5M	Download File View File

Pseudo-atomic model of microtubule-bound S.pombe kinesin-5 motor domain in the AMPPNP state (based on cryo-electron microscopy experiment): the N-terminus adopts multiple conformations.

Goulet, A., Moores, C.A., Cross, R.A.

(2016) Proc Natl Acad Sci U S A 113: E7483-E7489

Released	2016-11-30
Method	ELECTRON MICROSCOPY 9.3 Å
Organisms	Bos taurus Schizosaccharomyces pombe 972h-
Macromolecule	Kinesin-like protein cut7 (protein) Tubulin alpha-1D chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	ANP, GDP, GTP, MG, TA1

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5M5N	Download File View File

Pseudo-atomic model of microtubule-bound S.pombe kinesin-5 motor domain in the AMPPNP state (based on cryo-electron microscopy experiment): the N-terminus adopts multiple conformations.

Goulet, A., Moores, C.A., Cross, R.A.

(2016) Proc Natl Acad Sci U S A 113: E7483-E7489

Released	2016-11-30
Method	ELECTRON MICROSCOPY 9.3 Å
Organisms	Bos taurus Schizosaccharomyces pombe 972h-
Macromolecule	Kinesin-like protein cut7 (protein) Tubulin alpha-1D chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	ANP, GDP, GTP, MG, TA1

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5M5O	Download File View File

Pseudo-atomic model of microtubule-bound S.pombe kinesin-5 motor domain in the AMPPNP state (based on cryo-electron microscopy experiment): the N-terminus adopts multiple conformations.

Goulet, A., Moores, C.A., Cross, R.A.

(2016) Proc Natl Acad Sci U S A 113: E7483-E7489

Released	2016-11-30
Method	ELECTRON MICROSCOPY 9.3 Å
Organisms	Bos taurus Schizosaccharomyces pombe 972h-
Macromolecule	Kinesin-like protein cut7 (protein) Tubulin alpha-1D chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	ANP, GDP, GTP, MG, TA1

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5MJS	Download File View File

S. pombe microtubule copolymerized with GTP and Mal3-143

von Loeffelholz, O., Moores, C.

(2017) Nat Commun 8: 2110-2110

Released	2017-12-20
Method	ELECTRON MICROSCOPY 4.6 Å
Organisms	Schizosaccharomyces pombe 972h-
Macromolecule	Microtubule integrity protein mal3 (protein) Tubulin alpha-1 chain (protein) Tubulin beta chain (protein)
Unique Ligands	GDP, GTP

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5MM4	Download File View File

Ustilago maydis kinesin-5 motor domain in the AMPPNP state bound to microtubules

Moores, C.A., von Loeffelholz, O.

(2019) J Struct Biol

Released	2018-06-27
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Mycosarcoma maydis Sus scrofa
Macromolecule	Tubulin alpha-1A chain (protein) Tubulin beta chain (protein) kinesin-5 (protein)
Unique Ligands	ANP, GDP, GTP, MG, TA1

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5MM7	Download File View File

Ustilago maydis kinesin-5 motor domain with N-terminal extension in the AMPPNP state bound to microtubules

Moores, C.A., von Loeffelholz, O.

(2019) J Struct Biol

Released	2018-08-08
Method	ELECTRON MICROSCOPY 5.1 Å
Organisms	Mycosarcoma maydis Sus scrofa
Macromolecule	Tubulin alpha-1A chain (protein) Tubulin beta chain (protein) kinesin-5 (protein)
Unique Ligands	ANP, GDP, GTP, MG, TA1

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6I1D	Download File View File

Structure of the Ysh1-Mpe1 nuclease complex from S.cerevisiae

Hill, C.H., Boreikaite, V., Kumar, A., Casanal, A., Kubik, P., Degliesposti, G., Maslen, S., Mariani, A., von Loeffelholz, O., Girbig, M., Skehel, M., Passmore, L.A.

(2019) Mol Cell 73: 1217-1231.e11

Released	2019-02-13
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Endoribonuclease YSH1 (protein) Protein MPE1 (protein)
Unique Ligands	GOL, ZN

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6S8M	Download File View File

S. pombe microtubule decorated with Cut7 motor domain in the AMPPNP state

Moores, C.A., von Loeffelholz, O.

(2019) J Mol Biol 431: 864-872

Released	2019-08-21
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Schizosaccharomyces pombe
Macromolecule	Kinesin-like protein cut7 (protein) Tubulin alpha-1 chain (protein) Tubulin beta chain (protein)
Unique Ligands	ANP, EPB, GDP, GTP, MG

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6Y0G	Download File View File

Structure of human ribosome in classical-PRE state

Bhaskar, V., Schenk, A.D., Cavadini, S., von Loeffelholz, O., Natchiar, S.K., Klaholz, B.P., Chao, J.A.

(2020) Cell Rep 31: 107473-107473

Released	2020-04-15
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 76 Unique nucleic acid chains: 6
Unique Ligands	3HE, MG, ZN

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6Y2L	Download File View File

Structure of human ribosome in POST state

Bhaskar, V., Schenk, A.D., Cavadini, S., von Loeffelholz, O., Natchiar, S.K., Klaholz, B.P., Chao, J.A.

(2020) Cell Rep 31: 107473-107473

Released	2020-04-15
Method	ELECTRON MICROSCOPY 3 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 74 Unique nucleic acid chains: 6
Unique Ligands	3HE, MG, ZN

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6Y57	Download File View File

Structure of human ribosome in hybrid-PRE state

Bhaskar, V., Schenk, A.D., Cavadini, S., von Loeffelholz, O., Natchiar, S.K., Klaholz, B.P., Chao, J.A.

(2020) Cell Rep 31: 107473-107473

Released	2020-04-15
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 75 Unique nucleic acid chains: 7
Unique Ligands	MG, ZN

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6YW6	Download File View File

Cryo-EM structure of the ARP2/3 1B5CL isoform complex.

von Loeffelholz, O., Moores, C., Purkiss, A.

(2020) Biol Open 9:

Released	2020-07-22
Method	ELECTRON MICROSCOPY 4.2 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 7
Unique Ligands	ATP

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6YW7	Download File View File

Cryo-EM structure of the ARP2/3 1A5C isoform complex.

von Loeffelholz, O., Moores, C., Purkiss, A.

(2020) Biol Open 9:

Released	2020-07-22
Method	ELECTRON MICROSCOPY 4.5 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 7
Unique Ligands	ATP

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7QHM	Download File View File

Cytochrome bcc-aa3 supercomplex (respiratory supercomplex III2/IV2) from Corynebacterium glutamicum (stigmatellin and azide bound)

Kao, W.-C., Hunte, C.

(2022) Nat Commun 13: 545-545

Released	2022-05-18
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Corynebacterium glutamicum ATCC 13032
Macromolecule	Unique protein chains: 13
Unique Ligands	3PE, 9YF, AZI, CA, CDL, CU, CUA, DGA, FES, HAS, HEC, HEM, IX7, IZL, LMT, LYC, MN, MQ9, OXY, PLM, SMA

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7QHO	Download File View File

Cytochrome bcc-aa3 supercomplex (respiratory supercomplex III2/IV2) from Corynebacterium glutamicum (as isolated)

Kao, W.-C., Hunte, C.

(2022) Nature Communications 13: 545

Released	2022-05-18
Method	ELECTRON MICROSCOPY 3.1 Å
Organisms	Corynebacterium glutamicum ATCC 13032
Macromolecule	Unique protein chains: 13
Unique Ligands	3PE, 3PH, 9YF, CA, CDL, CU, CUA, DGA, FES, HAS, HEC, HEM, IX7, IZL, LMT, LYC, MN, MQ9, PLM

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8QOI	Download File View File

Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA

Holvec, S., Barchet, C., Frechin, L., Hazemann, I., von Loeffelholz, O., Klaholz, B.P.

(2024) Nat Struct Mol Biol 31: 1251-1264

Released	2024-06-12
Method	ELECTRON MICROSCOPY 1.9 Å
Organisms	Homo sapiens
Macromolecule	Unique protein chains: 75 Unique nucleic acid chains: 4
Unique Ligands	K, MG, SPD, ZN

1 to 20 of 20 Structures

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