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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = SVR

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Search Summary

This query matches 16 Structures.

Refinements

Structure Determination Methodology

experimental (16)

Scientific Name of Source Organism

	Homo sapiens (4)
	Bothrops moojeni (2)
	Mus musculus (2)
	Arabidopsis thaliana (1)
	Bothrops asper (1)
	Ebola virus (1)
	Echis carinatus (1)
	Leishmania mexicana (1)
	Murine norovirus 1 (1)
	Phlebovirus JS2010-018 (1)

More...

Taxonomy

	Eukaryota (13)
	Riboviria (3)

Experimental Method

	X-RAY DIFFRACTION (15)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (16)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (8)
	2.5 - 3.0 (2)
	3.0 - 3.5 (1)

Release Date

	2005 - 2009 (6)
	2010 - 2014 (3)
	2015 - 2019 (3)
	2020 - 2024 (4)

Enzyme Classification Name

	Hydrolases (6)
	Transferases (4)

Membrane Protein Annotation

	OPM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (7)
	Cyclic (9)
	Dihedral (3)

SCOP Classification

	All alpha proteins (5)
	Multi-domain proteins (alpha and beta) (1)
	All beta proteins (1)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 16 of 16 Structures

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1Y4L \| pdb_00001y4l	Download File View File

Crystal structure of Bothrops asper myotoxin II complexed with the anti-trypanosomal drug suramin

Murakami, M.T., Arruda, E.Z., Melo, P.A., Martinez, A.B., Calil-Elias, S., Tomaz, M.A., Lomonte, B., Gutierrez, J.M., Arni, R.K.

(2005) J Mol Biology 350: 416-426

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bothrops asper
Macromolecule	Phospholipase A2 homolog 2 (protein)
Unique Ligands	IPA, P33, SVR

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2H9T \| pdb_00002h9t	Download File View File

Crystal structure of human alpha-thrombin in complex with suramin

Lima, L.M.T.R., Polikarpov, I., Monteiro, R.Q.

(2009) Biochim Biophys Acta 1794: 873-881

Released	2007-05-22
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	PPACK active site thrombin inhibitor (protein) Thrombin (protein)
Unique Ligands	SVR

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2NYR \| pdb_00002nyr	Download File View File

Crystal Structure of Human Sirtuin Homolog 5 in Complex with Suramin

Min, J.R., Antoshenko, T., Allali-Hassani, A., Dong, A., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Plotnikov, A.N., Structural Genomics Consortium (SGC)

(2007) Structure 15: 377-389

Released	2006-12-19
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Homo sapiens
Macromolecule	NAD-dependent deacetylase sirtuin-5 (protein)
Unique Ligands	SVR, ZN

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3BF6 \| pdb_00003bf6	Download File View File

Thrombin:suramin complex

Lima, L.M.T.R., Polikarpov, I., Monteiro, R.Q.

(2009) Biochim Biophys Acta 1794: 873-881

Released	2007-12-25
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	PHE-PRO-ARG (protein) Thrombin, HEAVY CHAIN (protein) Thrombin, LIGHT CHAIN (protein)
Unique Ligands	SVR

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3BJW \| pdb_00003bjw	Download File View File

Crystal Structure of ecarpholin S complexed with suramin

Zhou, X., Sivaraman, J.

(2008) Biophys J 95: 3366-3380

Released	2007-12-18
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Echis carinatus
Macromolecule	Phospholipase A2 (protein)
Unique Ligands	SVR

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3GAN \| pdb_00003gan	Download File View File

Crystal structure of gene product from Arabidopsis thaliana At3g22680 with bound suramin

Burgie, E.S., Bingman, C.A., Wesenberg, G.E., Phillips Jr., G.N., Center for Eukaryotic Structural Genomics (CESG)

To be published

Released	2009-03-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Arabidopsis thaliana
Macromolecule	Uncharacterized protein At3g22680 (protein)
Unique Ligands	CL, SVR

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3PP7 \| pdb_00003pp7	Download File View File

Crystal structure of Leishmania mexicana pyruvate kinase in complex with the drug suramin, an inhibitor of glycolysis.

Morgan, H.P., Auld, D.S., McNae, I.W., Nowicki, M.W., Michels, P.A.M., Fothergill-Gilmore, L.A., Walkinshaw, M.D.

(2011) J Biological Chem 286: 31232-31240

Released	2010-12-15
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Leishmania mexicana
Macromolecule	Pyruvate kinase (protein)
Unique Ligands	GOL, K, PTK, SVR

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3UR0 \| pdb_00003ur0	Download File View File

Crystal structures of murine norovirus RNA-dependent RNA polymerase in complex with Suramin

Milani, M., Mastrangelo, E., Bolognesi, M.

(2012) J Mol Biology 419: 198-210

Released	2012-05-02
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Murine norovirus 1
Macromolecule	RNA-dependent RNA polymerase (protein)
Unique Ligands	SO4, SVR

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4J4V \| pdb_00004j4v	Download File View File

Pentameric SFTSVN with suramin

Jiao, L., Ouyang, S., Liang, M., Niu, F., Shaw, N., Wu, W., Ding, W., Jin, C., Zhu, Y., Zhang, F., Wang, T., Li, C., Zuo, X., Luan, C.H., Li, D., Liu, Z.J.

(2013) J Virol 87: 6829-6839

Released	2013-05-22
Method	X-RAY DIFFRACTION 2.303 Å
Organisms	Phlebovirus JS2010-018
Macromolecule	Nucleocapsid protein (protein)
Unique Ligands	SVR

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4X3U \| pdb_00004x3u	Download File View File

Crystal structure of chromobox homolog 7 (CBX7) chromodomain with Suramin

Ren, C., Zhou, M.M.

(2015) Chem Biol 22: 161-168

Released	2015-03-04
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Mus musculus
Macromolecule	Chromobox protein homolog 7 (protein)
Unique Ligands	SVR

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4YV5 \| pdb_00004yv5	Download File View File

Crystal Structure of Myotoxin II from Bothrops moojeni complexed to Suramin

Salvador, G.H.M., Fontes, M.R.M.

(2015) Acta Crystallogr D Biol Crystallogr 71: 2066-2078

Released	2015-10-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bothrops moojeni
Macromolecule	Basic phospholipase A2 homolog 2 (protein)
Unique Ligands	1PE, PE4, SO4, SVR

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6CE2 \| pdb_00006ce2	Download File View File

Crystal structure of Myotoxin I (MjTX-I) from Bothrops moojeni complexed to inhibitor suramin

Salvador, G.H.M., Fontes, M.R.M.

(2018) Sci Rep 8: 10317-10317

Released	2018-07-25
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Bothrops moojeni
Macromolecule	Basic phospholipase A2 homolog 1 (protein)
Unique Ligands	PE4, SVR

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6Z7B \| pdb_00006z7b	Download File View File

Variant Surface Glycoprotein VSGsur bound to suramin

Zeelen, J.P., Straaten van, M., Stebbins, C.E., Jeffrey, P.

(2021) Nat Microbiol 6: 392-400

Released	2021-03-24
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Trypanosoma brucei rhodesiense
Macromolecule	Variant surface glycoprotein Sur (protein)
Unique Ligands	SVR
Unique branched monosaccharides	BMA, MAN, NAG

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7AH8 \| pdb_00007ah8	Download File View File

NF-Y bound to suramin inhibitor

Nardone, V., Chaves-Sanjuan, A., Lapi, M., Nardini, M.

(2020) Cells 9:

Released	2021-08-04
Method	X-RAY DIFFRACTION 2.70001356517 Å
Organisms	Homo sapiens
Macromolecule	Isoform 6 of Nuclear transcription factor Y subunit gamma (protein) Nuclear transcription factor Y subunit beta (protein)
Unique Ligands	FLC, GOL, SVR

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7YET \| pdb_00007yet	Download File View File

The structure of EBOV L-VP35 in complex with suramin

Shi, Y., Yuan, B., Peng, Q.

(2022) Nature 610: 394-401

Released	2022-10-05
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Ebola virus
Macromolecule	Polymerase cofactor VP35 (protein) RNA-directed RNA polymerase L (protein)
Unique Ligands	SVR

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9GTE \| pdb_00009gte	Download File View File

Crystal structure of TRIM21 PRY-SPRY domain bound to Suramin

Kim, Y., Knapp, S., Kraemer, A., Structural Genomics Consortium (SGC)

To be published

Released	2024-10-30
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Mus musculus
Macromolecule	E3 ubiquitin-protein ligase TRIM21 (protein)
Unique Ligands	EDO, SVR

1 to 16 of 16 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1Y4L | pdb_00001y4l

Crystal structure of Bothrops asper myotoxin II complexed with the anti-trypanosomal drug suramin

2H9T | pdb_00002h9t

Crystal structure of human alpha-thrombin in complex with suramin

2NYR | pdb_00002nyr

Crystal Structure of Human Sirtuin Homolog 5 in Complex with Suramin

3BF6 | pdb_00003bf6

Thrombin:suramin complex

3BJW | pdb_00003bjw

Crystal Structure of ecarpholin S complexed with suramin

3GAN | pdb_00003gan

Crystal structure of gene product from Arabidopsis thaliana At3g22680 with bound suramin

3PP7 | pdb_00003pp7

Crystal structure of Leishmania mexicana pyruvate kinase in complex with the drug suramin, an inhibitor of glycolysis.

3UR0 | pdb_00003ur0

Crystal structures of murine norovirus RNA-dependent RNA polymerase in complex with Suramin

4J4V | pdb_00004j4v

Pentameric SFTSVN with suramin

4X3U | pdb_00004x3u

Crystal structure of chromobox homolog 7 (CBX7) chromodomain with Suramin

4YV5 | pdb_00004yv5

Crystal Structure of Myotoxin II from Bothrops moojeni complexed to Suramin

6CE2 | pdb_00006ce2

Crystal structure of Myotoxin I (MjTX-I) from Bothrops moojeni complexed to inhibitor suramin

6Z7B | pdb_00006z7b

Variant Surface Glycoprotein VSGsur bound to suramin

7AH8 | pdb_00007ah8

NF-Y bound to suramin inhibitor

7YET | pdb_00007yet

The structure of EBOV L-VP35 in complex with suramin

9GTE | pdb_00009gte

Crystal structure of TRIM21 PRY-SPRY domain bound to Suramin

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1Y4L | pdb_00001y4l

2H9T | pdb_00002h9t

2NYR | pdb_00002nyr

3BF6 | pdb_00003bf6

3BJW | pdb_00003bjw

3GAN | pdb_00003gan

3PP7 | pdb_00003pp7

3UR0 | pdb_00003ur0

4J4V | pdb_00004j4v

4X3U | pdb_00004x3u

4YV5 | pdb_00004yv5

6CE2 | pdb_00006ce2

6Z7B | pdb_00006z7b

7AH8 | pdb_00007ah8

7YET | pdb_00007yet

9GTE | pdb_00009gte