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232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 22 Structures.

Refinements

Structure Determination Methodology

experimental (22)

Scientific Name of Source Organism

	synthetic construct (22)
	Escherichia coli K-12 (21)

Taxonomy

	other sequences (22)
	Bacteria (21)

Experimental Method

X-RAY DIFFRACTION (22)

Polymer Entity Type

Protein (22)

Refinement Resolution (Å)

	2.0 - 2.5 (2)
	2.5 - 3.0 (18)
	3.0 - 3.5 (2)

Release Date

	2010 - 2014 (2)
	2015 - 2019 (4)
	2020 - 2024 (16)

Membrane Protein Annotation

	PDBTM (21)
	MemProtMD (18)
	mpstruc (17)
	OPM (3)

Symmetry Type

	Asymmetric (21)
	Cyclic (1)

AllSelected

1 to 22 of 22 Structures

Page 1 of 1

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Explore in 3D

4DX6	Download File View File

Transport of drugs by the multidrug transporter AcrB involves an access and a deep binding pocket that are separated by a switch-loop

Eicher, T., Cha, H., Seeger, M.A., Brandstaetter, L., El-Delik, J., Bohnert, J.A., Kern, W.V., Verrey, F., Gruetter, M.G., Diederichs, K., Pos, K.M.

(2012) Proc Natl Acad Sci U S A 109: 5687-5692

Released	2012-05-02
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	Acriflavine resistance protein B (protein) DARPIN (protein)
Unique Ligands	LMT

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4RV1	Download File View File

Crystal Structure of Engineered Protein. Northeast Structural Genomics Consortium (NESG) Target OR497.

Vorobiev, S., Parmeggiani, F., Seetharaman, J., Xiao, R., Everett, J.K., Acton, T.B., Baker, D., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2014-12-10
Method	X-RAY DIFFRACTION 2.573 Å
Organisms	synthetic construct
Macromolecule	Engineered Protein OR497 (protein)
Unique Ligands	ACT

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5JMN	Download File View File

Fusidic acid bound AcrB

Oswald, C., Tam, H.K., Pos, K.M.

(2016) Nat Commun 7: 13819-13819

Released	2016-12-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPin (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	D10, D12, ETE, FUA, GOL, HEX, LMT, OCT, P3G, PTY, SO4

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6Q4N	Download File View File

Fusidic acid bound AcrB_V340A

Tam, H.K., Pos, K.M.

(2020) J Mol Biol 432: 861-877

Released	2019-11-13
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPin (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	D10, D12, DDQ, DDR, FUA, GOL, HEX, LMT, OCT, P6G, PTY, SO4

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6Q4O	Download File View File

Fusidic acid bound AcrB_I27A

Tam, H.K., Pos, K.M.

(2020) J Mol Biol 432: 861-877

Released	2019-11-13
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	D10, D12, DDQ, DDR, FUA, GOL, HEX, LMT, OCT, PTY, SO4

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6Q4P	Download File View File

Fusidic acid bound AcrB_N298A

Tam, H.K., Pos, K.M.

(2020) J Mol Biol 432: 861-877

Released	2019-11-13
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPin (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	C14, CL, D10, D12, DDQ, DDR, ETE, FUA, GOL, HEX, LMT, OCT, PTY, SO4

Explore in 3D

6ZO5	Download File View File

Fusidic acid binding to the TM1/TM2 groove of AcrB-G619P_G621P

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	C14, D10, D12, DDR, EDO, FUA, GOL, HEX, LMT, LPX, OCT, PGE, PTY, SO4, XPE

Explore in 3D

6ZO6	Download File View File

Minocycline binding to the deep binding pocket of AcrB-G619P

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	1PE, 8K6, C14, CL, D10, D12, DDQ, DDR, EDO, GOL, HEX, LMT, LPX, MIY, MYS, OCT, PG4, PGE, PTY, R16, SO4

Explore in 3D

6ZO7	Download File View File

3-Formylrifamycin SV binding to the access pocket of AcrB-G619P L and T protomer

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	3YI, CL, D10, D12, DDQ, EDO, GOL, HEX, LMT, NA, PTY, R16, SO4

Explore in 3D

6ZO8	Download File View File

Minocycline binding to the deep binding pocket of AcrB-G621P

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	C14, CL, D10, D12, DDQ, DDR, EDO, GOL, HEX, LMT, LMU, LPX, MIY, NA, OCT, PTY, SO4

Explore in 3D

6ZO9	Download File View File

Binding of two rifabutins to the access pocket of AcrB-G621P T protomer

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	C14, CL, D10, D12, DDR, EDO, GOL, HEX, LMT, OCT, PTY, RBT, SO4

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6ZOA	Download File View File

Partially induced AcrB T protomer and DDM binding to the TM8/PC2 pathway of AcrB L2 protomer

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	C14, CL, D10, D12, DDQ, EDO, GOL, HEX, LMT, LNK, OCT, PTY

Explore in 3D

6ZOB	Download File View File

3-Formylrifamycin SV binding to the access pocket of AcrB L protomer

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	3YI, CL, D10, DDQ, DDR, EDO, ETE, GOL, HEX, LMT, OCT

Explore in 3D

6ZOC	Download File View File

Erythromycin binding to the access pocket of AcrB-G616P L protomer and 3-formylrifamycin SV binding to the access pocket of AcrB-G616P T protomer

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	3YI, C14, D12, DDQ, EDO, ERY, GOL, HEX, LMT, OCT, PG4, PTY, SO4

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6ZOD	Download File View File

Fusidic acid binding to the allosteric deep transmembrane domain binding pocket, TM7/TM8 groove, and TM1/TM2 groove of the fully induced AcrB T protomer

Oswald, C., Tam, H.K., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	8K6, D10, D12, EDO, FUA, GOL, HEX, LMT, PGE, PTY, SO4

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6ZOE	Download File View File

AcrB-F563A symmetric T protomer

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	D10, EDO, LMT, PGE

Explore in 3D

6ZOF	Download File View File

Fusidic acid binding to the TM7/TM8 groove of AcrB-F380A T protomer

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	D10, DDQ, FUA, GOL, LMT, PTY, R16, SO4

Explore in 3D

6ZOG	Download File View File

Minocycline binding to the deep binding pocket of AcrB-I38F_I671T

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	8K6, C14, D10, D12, DDQ, DDR, EDO, GOL, LMT, MIY, MYS, OCT, PTY, SO4

Explore in 3D

6ZOH	Download File View File

3-Formylrifamycin SV binding to the access pocket of AcrB-G619P_G621P L and T protomers

Tam, H.K., Foong, W.E., Pos, K.M.

(2021) Nat Commun 12: 3889-3889

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	3YI, D10, D12, DDQ, DDR, EDO, GOL, HEX, LMT, LPX, PTY

Explore in 3D

7OUK	Download File View File

BDM88855 inhibitor bound to the transmembrane domain of AcrB

Tam, H.K., Foong, W.E., Pos, K.M.

(2022) Nat Commun 13: 115-115

Released	2021-12-29
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	1K8, C14, D10, DDQ, DDR, EDO, GOL, LMT, LPX, OCT, SO4

Explore in 3D

7OUL	Download File View File

BDM88832 inhibitor bound to the transmembrane domain of AcrB-R971A

Tam, H.K., Foong, W.E., Pos, K.M.

(2022) Nat Commun 13: 115-115

Released	2021-12-29
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	1KE, C14, D12, DDQ, EDO, GOL, LMT, LPX, SO4

Explore in 3D

7OUM	Download File View File

BDM88855 inhibitor bound to the transmembrane domain of AcrB-R971A

Tam, H.K., Foong, W.E., Pos, K.M.

(2022) Nat Commun 13: 115-115

Released	2021-12-29
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Escherichia coli K-12 synthetic construct
Macromolecule	DARPIN (protein) Multidrug efflux pump subunit AcrB (protein)
Unique Ligands	1K8, C14, D10, DDQ, EDO, GOL, LMT, LPX, OCT, SO4

1 to 22 of 22 Structures

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