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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Magnetospirillum gryphiswaldense"

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Search Summary

This query matches 105 Structures.

Refinements

Structure Determination Methodology

experimental (105)

Scientific Name of Source Organism

	Magnetospirillum gryphiswaldense (55)
	Magnetospirillum gryphiswaldense MSR-1 (44)
	Magnetospirillum gryphiswaldense MSR-1 v2 (7)
	Homo sapiens (3)

Taxonomy

	Bacteria (105)
	Eukaryota (3)

Experimental Method

X-RAY DIFFRACTION (105)

Polymer Entity Type

	Protein (105)
	DNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (11)
	1.5 - 2.0 (67)
	2.0 - 2.5 (20)
	2.5 - 3.0 (7)

Release Date

	2010 - 2014 (19)
	2015 - 2019 (65)
	2020 - 2024 (21)

Symmetry Type

	Asymmetric (57)
	Cyclic (48)
	Helical (4)

SCOP Classification

	All alpha proteins (6)
	Artifacts (3)

AllSelected

1 to 25 of 105 Structures

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3AS8 \| pdb_00003as8	Download File View File

MamA MSR-1 P41212

Zeytuni, N., Davidov, G., Zarivach, R.

(2011) Proc Natl Acad Sci U S A 108: E480-E487

Released	2011-07-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Magnetospirillum gryphiswaldense MSR-1
Macromolecule	Magnetosome protein MamA (protein)
Unique Ligands	SO4

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3ASF \| pdb_00003asf	Download File View File

MamA MSR-1 C2

Zeytuni, N., Davidov, G., Zarivach, R.

(2011) Proc Natl Acad Sci U S A 108: E480-E487

Released	2011-07-20
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Magnetospirillum gryphiswaldense MSR-1
Macromolecule	Magnetosome protein MamA (protein)
Unique Ligands	SO4

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3W5X \| pdb_00003w5x	Download File View File

MamM-CTD

Zeytuni, N., Davidov, G., Zarivach, R.

(2014) PLoS One 9: e92141-e92141

Released	2014-04-16
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Magnetospirillum gryphiswaldense MSR-1
Macromolecule	Magnetosome protein MamM (protein)
Unique Ligands	SO4

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3W5Y \| pdb_00003w5y	Download File View File

MamM-CTD

Zeytuni, N., Davidov, G., Zarivach, R.

(2014) PLoS One 9: e92141-e92141

Released	2014-04-16
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Magnetospirillum gryphiswaldense MSR-1
Macromolecule	Magnetosome protein MamM (protein)
Unique Ligands	SO4

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3W5Z \| pdb_00003w5z	Download File View File

MamM-CTD D249A

Zeytuni, N., Davidov, G., Zarivach, R.

(2014) PLoS One 9: e92141-e92141

Released	2014-04-16
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Magnetospirillum gryphiswaldense MSR-1
Macromolecule	Magnetosome protein MamM (protein)
Unique Ligands	NA, SO4

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3W60 \| pdb_00003w60	Download File View File

MamM-CTD H264A

Zeytuni, N., Davidov, G., Zarivach, R.

(2014) PLoS One 9: e92141-e92141

Released	2014-04-16
Method	X-RAY DIFFRACTION 1.82 Å
Organisms	Magnetospirillum gryphiswaldense MSR-1
Macromolecule	Magnetosome protein MamM (protein)
Unique Ligands	SO4

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3W61 \| pdb_00003w61	Download File View File

MamM-CTD H285A

Zeytuni, N., Davidov, G., Zarivach, R.

(2014) PLoS One 9: e92141-e92141

Released	2014-04-16
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Magnetospirillum gryphiswaldense MSR-1
Macromolecule	Magnetosome protein MamM (protein)
Unique Ligands	SO4

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3W62 \| pdb_00003w62	Download File View File

MamM-CTD E289A

Zeytuni, N., Davidov, G., Zarivach, R.

(2014) PLoS One 9: e92141-e92141

Released	2014-04-16
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Magnetospirillum gryphiswaldense MSR-1
Macromolecule	Magnetosome protein MamM (protein)
Unique Ligands	SO4

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3W63 \| pdb_00003w63	Download File View File

MamM-CTD 215-293

Zeytuni, N., Davidov, G., Zarivach, R.

(2014) PLoS One 9: e92141-e92141

Released	2014-04-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Magnetospirillum gryphiswaldense MSR-1
Macromolecule	Magnetosome protein MamM (protein)
Unique Ligands	SO4

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3W64 \| pdb_00003w64	Download File View File

MamM-CTD 215-293

Zeytuni, N., Davidov, G., Zarivach, R.

(2014) PLoS One 9: e92141-e92141

Released	2014-04-16
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Magnetospirillum gryphiswaldense MSR-1
Macromolecule	Magnetosome protein MamM (protein)
Unique Ligands	PG4, SO4

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3W65 \| pdb_00003w65	Download File View File

MamM-CTD D249A and H264A

Zeytuni, N., Davidov, G., Zarivach, R.

(2014) PLoS One 9: e92141-e92141

Released	2014-04-16
Method	X-RAY DIFFRACTION 2.37 Å
Organisms	Magnetospirillum gryphiswaldense MSR-1
Macromolecule	Magnetosome protein MamM (protein)
Unique Ligands	SO4

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3W66 \| pdb_00003w66	Download File View File

MamM-CTD D249A and H285A

Zeytuni, N., Davidov, G., Zarivach, R.

(2014) PLoS One 9: e92141-e92141

Released	2014-04-16
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Magnetospirillum gryphiswaldense MSR-1
Macromolecule	Magnetosome protein MamM (protein)

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3W8G \| pdb_00003w8g	Download File View File

MamM V260R

Zeytuni, N., Davidov, G., Zarivach, R.

(2014) PLoS One 9: e97154-e97154

Released	2014-06-11
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Magnetospirillum gryphiswaldense MSR-1
Macromolecule	Magnetosome protein MamM (protein)

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3W8P \| pdb_00003w8p	Download File View File

MamM-CTD D249A&H28A mutant

Zeytuni, N., Davidov, G., Zarivach, R.

(2014) PLoS One 9: e92141-e92141

Released	2014-04-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Magnetospirillum gryphiswaldense MSR-1
Macromolecule	Magnetosome protein MamM (protein)
Unique Ligands	SO4

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4RAY \| pdb_00004ray	Download File View File

Crystal structure of Magnetospirillum gryphiswaldense MSR-1 Apo-Fur

Deng, Z., Liu, Z., Chen, Z.

Nat Commun 6: 7642-7642

Released	2015-07-15
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Magnetospirillum gryphiswaldense MSR-1 v2
Macromolecule	DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport(Fur family) (protein)
Unique Ligands	FLC, SO4

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4RAZ \| pdb_00004raz	Download File View File

Crystal structure of Magnetospirillum gryphiswaldense MSR-1 holo-Fur

Deng, Z., Wang, Q., Chen, Z.

Nat Commun 6: 7642-7642

Released	2015-07-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Magnetospirillum gryphiswaldense MSR-1 v2
Macromolecule	DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport(Fur family) (protein)
Unique Ligands	EDO, MN

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4RB0 \| pdb_00004rb0	Download File View File

Crystal structure of Magnetospirillum gryphiswaldense MSR-1 SeMet-Apo-Fur

Deng, Z., Chen, Z.

Nat Commun 6: 7642-7642

Released	2015-07-15
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Magnetospirillum gryphiswaldense MSR-1 v2
Macromolecule	DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport(Fur family) (protein)
Unique Ligands	FLC, SO4

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4RB1 \| pdb_00004rb1	Download File View File

Crystal structure of Magnetospirillum gryphiswaldense MSR-1 Fur-Mn2+-E. coli Fur box

Deng, Z., Chen, Z.

Nat Commun 6: 7642-7642

Released	2015-07-15
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Magnetospirillum gryphiswaldense MSR-1 v2
Macromolecule	DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport(Fur family) (protein) DNA (5'-D(CPGPCPGPAPTPAPAPTPGPAPTPAPAPTPCPAPTPTPAPTPCPCPGP*C)-3') (nucleic acid)
Unique Ligands	MN

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4RB2 \| pdb_00004rb2	Download File View File

Crystal structure of Magnetospirillum gryphiswaldense MSR-1 SeMet-Fur-Mn2+-feoAB1 operator

Deng, Z., Chen, Z.

Nat Commun 6: 7642-7642

Released	2015-07-15
Method	X-RAY DIFFRACTION 2.82 Å
Organisms	Magnetospirillum gryphiswaldense MSR-1 v2
Macromolecule	DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport(Fur family) (protein) DNA (25-MER) (nucleic acid)
Unique Ligands	MN

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4RB3 \| pdb_00004rb3	Download File View File

Crystal structure of Magnetospirillum gryphiswaldense MSR-1 Fur-Mn2+-feoAB1 operator

Deng, Z., Chen, Z.

Nat Commun 6: 7642-7642

Released	2015-07-15
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Magnetospirillum gryphiswaldense MSR-1 v2
Macromolecule	DNA-binding transcriptional dual regulator of siderophore biosynthesis and transport(Fur family) (protein) DNA (25-MER) (nucleic acid)
Unique Ligands	MN, SO4

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4V2Y \| pdb_00004v2y	Download File View File

Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Thalidomide

Hartmann, M.D., Lupas, A.N., Hernandez Alvarez, B.

(2014) J Struct Biol 188: 225

Released	2014-12-17
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Magnetospirillum gryphiswaldense MSR-1
Macromolecule	CEREBLON ISOFORM 4 (protein)
Unique Ligands	EF2, ZN

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4V2Z \| pdb_00004v2z	Download File View File

Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Pomalidomide

Hartmann, M.D., Lupas, A.N., Hernandez Alvarez, B.

(2014) J Struct Biol 188: 225

Released	2014-12-17
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Magnetospirillum gryphiswaldense MSR-1
Macromolecule	CEREBLON ISOFORM 4 (protein)
Unique Ligands	Y70, ZN

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4V30 \| pdb_00004v30	Download File View File

Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Lenalidomide

Hartmann, M.D., Lupas, A.N., Hernandez Alvarez, B.

(2014) J Struct Biol 188: 225

Released	2014-12-17
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Magnetospirillum gryphiswaldense MSR-1
Macromolecule	CEREBLON ISOFORM 4 (protein)
Unique Ligands	LVY, ZN

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4V31 \| pdb_00004v31	Download File View File

Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Deoxyuridine

Hartmann, M.D., Lupas, A.N., Hernandez Alvarez, B.

(2014) J Struct Biol 188: 225

Released	2014-12-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Magnetospirillum gryphiswaldense MSR-1
Macromolecule	CEREBLON ISOFORM 4 (protein)
Unique Ligands	DUR, FLC, ZN

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4V32 \| pdb_00004v32	Download File View File

Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with Thalidomide, Y101F mutant

Hartmann, M.D., Lupas, A.N., Hernandez Alvarez, B.

(2014) J Struct Biol 188: 225

Released	2014-12-17
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Magnetospirillum gryphiswaldense MSR-1
Macromolecule	CEREBLON ISOFORM 4 (protein)
Unique Ligands	EF2, ZN

1 to 25 of 105 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

3AS8 | pdb_00003as8

3ASF | pdb_00003asf

3W5X | pdb_00003w5x

3W5Y | pdb_00003w5y

3W5Z | pdb_00003w5z

3W60 | pdb_00003w60

3W61 | pdb_00003w61

3W62 | pdb_00003w62

3W63 | pdb_00003w63

3W64 | pdb_00003w64

3W65 | pdb_00003w65

3W66 | pdb_00003w66

3W8G | pdb_00003w8g

3W8P | pdb_00003w8p

4RAY | pdb_00004ray

4RAZ | pdb_00004raz

4RB0 | pdb_00004rb0

4RB1 | pdb_00004rb1

4RB2 | pdb_00004rb2

4RB3 | pdb_00004rb3

4V2Y | pdb_00004v2y

4V2Z | pdb_00004v2z

4V30 | pdb_00004v30

4V31 | pdb_00004v31

4V32 | pdb_00004v32