RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Chem Comp Monomers (Polymer Entity Container Identifiers) = "DOC"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 45 Structures.

Refinements

Structure Determination Methodology

experimental (45)

Scientific Name of Source Organism

Lactiplantibacillus plantarum WCFS1 (45)

Taxonomy

Bacteria (45)

Experimental Method

X-RAY DIFFRACTION (45)

Polymer Entity Type

Protein (45)

Refinement Resolution (Å)

	1.5 - 2.0 (7)
	2.0 - 2.5 (16)
	2.5 - 3.0 (14)
	3.0 - 3.5 (6)
	3.5 - 4.0 (2)

Release Date

	2005 - 2009 (15)
	2010 - 2014 (7)
	2015 - 2019 (11)
	2020 - 2024 (12)

Enzyme Classification Name

	Lyases (13)
	Transferases (9)
	Hydrolases (8)
	Isomerases (4)
	Ligases (2)
	Oxidoreductases (2)

Symmetry Type

	Cyclic (19)
	Dihedral (18)
	Asymmetric (9)

SCOP Classification

	Alpha and beta proteins (a/b) (3)
	All alpha proteins (1)
	Artifacts (2)
	All beta proteins (1)

AllSelected

1 to 25 of 45 Structures

Page 1 of 2

Sort by

Explore in 3D

2F6K: Entity 1	Download File View File

Crystal Structure of Amidohydrorolase II; Northeast Structural Genomics Target LpR24

Das, K., Xiao, R., Acton, T., Ma, L., Arnold, E., Montelione, G.T., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2006-01-10
Method	X-RAY DIFFRACTION 2.5 Å
Chain IDs	A, B
Organism	Lactiplantibacillus plantarum WCFS1
Macromolecule	metal-dependent hydrolase

Explore in 3D

2GC9: Entity 1	Download File View File

Crystal structure of p-coumaric acid decarboxylase (NP_786857.1) from Lactobacillus plantarum at 1.70 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2006-03-21
Method	X-RAY DIFFRACTION 1.7 Å
Chain IDs	A, B
Organism	Lactiplantibacillus plantarum WCFS1
Macromolecule	p-coumaric acid decarboxylase

Explore in 3D

2PJQ: Entity 1	Download File View File

Crystal structure of Q88U62_LACPL from Lactobacillus plantarum. Northeast Structural Genomics target LpR71

Benach, J., Su, M., Seetharaman, J., Forouhar, F., Chen, C.X., Cunningham, K., Ma, L.-C., Owens, L., Baran, M., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2007-05-01
Method	X-RAY DIFFRACTION 2.8 Å
Chain IDs	A, B, C, D
Organism	Lactiplantibacillus plantarum WCFS1
Macromolecule	Uncharacterized protein lp_2664

Explore in 3D

2RAF: Entity 1	Download File View File

Crystal structure of putative dinucleotide-binding oxidoreductase (NP_786167.1) from Lactobacillus plantarum at 1.60 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2007-10-02
Method	X-RAY DIFFRACTION 1.6 Å
Chain IDs	A, B, C
Organism	Lactiplantibacillus plantarum WCFS1
Macromolecule	Putative Dinucleotide-Binding Oxidoreductase

Explore in 3D

3B7H: Entity 1	Download File View File

Crystal structure of the prophage Lp1 protein 11

Zhang, R., Zhou, M., Keigher, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2007-12-04
Method	X-RAY DIFFRACTION 2 Å
Chain ID	A
Organism	Lactiplantibacillus plantarum WCFS1
Macromolecule	Prophage Lp1 protein 11

Explore in 3D

3BA3: Entity 1	Download File View File

Crystal structure of Pyridoxamine 5'-phosphate oxidase-like protein (NP_783940.1) from Lactobacillus plantarum at 1.55 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2007-11-20
Method	X-RAY DIFFRACTION 1.55 Å
Chain IDs	A, B
Organism	Lactiplantibacillus plantarum WCFS1
Macromolecule	Pyridoxamine 5'-phosphate oxidase-like protein

Explore in 3D

3BJR: Entity 1	Download File View File

Crystal structure of a putative carboxylesterase (lp_1002) from lactobacillus plantarum wcfs1 at 2.09 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2007-12-18
Method	X-RAY DIFFRACTION 2.09 Å
Chain ID	A
Organism	Lactiplantibacillus plantarum WCFS1
Macromolecule	Putative carboxylesterase

Explore in 3D

3BXP: Entity 1	Download File View File

CRYSTAL STRUCTURE OF A PUTATIVE CARBOXYLESTERASE (LP_2923) FROM LACTOBACILLUS PLANTARUM WCFS1 AT 1.70 A RESOLUTION

Joint Center for Structural Genomics (JCSG)

To be published

Released	2008-01-29
Method	X-RAY DIFFRACTION 1.7 Å
Chain IDs	A, B
Organism	Lactiplantibacillus plantarum WCFS1
Macromolecule	Putative lipase/esterase

Explore in 3D

3CEA: Entity 1	Download File View File

Crystal structure of myo-inositol 2-dehydrogenase (NP_786804.1) from Lactobacillus plantarum at 2.40 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2008-03-11
Method	X-RAY DIFFRACTION 2.4 Å
Chain IDs	A, B, C, D
Organism	Lactiplantibacillus plantarum WCFS1
Macromolecule	Myo-inositol 2-dehydrogenase

Explore in 3D

3CLK: Entity 1	Download File View File

Crystal structure of a transcription regulator from Lactobacillus plantarum

Sugadev, R., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2008-04-01
Method	X-RAY DIFFRACTION 2.08 Å
Chain IDs	A, B
Organism	Lactiplantibacillus plantarum WCFS1
Macromolecule	Transcription regulator

Explore in 3D

3CNY: Entity 1	Download File View File

Crystal structure of a putative inositol catabolism protein iole (iole, lp_3607) from lactobacillus plantarum wcfs1 at 1.85 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2008-04-08
Method	X-RAY DIFFRACTION 1.85 Å
Chain IDs	A, B
Organism	Lactiplantibacillus plantarum WCFS1
Macromolecule	Inositol catabolism protein IolE

Explore in 3D

3COL: Entity 1	Download File View File

Crystal structure of putative transcription regulator from Lactobacillus plantarum

Chang, C., Bigelow, L., Freeman, L., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2008-04-08
Method	X-RAY DIFFRACTION 2.1 Å
Chain IDs	A, B
Organism	Lactiplantibacillus plantarum WCFS1
Macromolecule	Putative transcription regulator

Explore in 3D

3CQ9: Entity 1	Download File View File

Crystal structure of the lp_1622 protein from Lactobacillus plantarum. Northeast Structural Genomics Consortium target LpR114

Vorobiev, S.M., Abashidze, M., Seetharaman, J., Zhao, L., Maglaqui, M., Foote, E.L., Ciccosanti, C., Janjua, H., Xiao, R., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2008-04-15
Method	X-RAY DIFFRACTION 2.2 Å
Chain IDs	A, B, C, D
Organism	Lactiplantibacillus plantarum WCFS1
Macromolecule	Uncharacterized protein lp_1622

Explore in 3D

3D3N: Entity 1	Download File View File

Crystal structure of lipase/esterase (lp_2923) from Lactobacillus plantarum. Northeast Structural Genomics Consortium target LpR108

Forouhar, F., Su, M., Seetharaman, J., Mao, L., Janjua, H., Xiao, R., Ciccosanti, C., Maglaqui, M., Foote, E.L., Zhao, L., Everett, J.K., Acton, T.B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

To be published

Released	2008-06-10
Method	X-RAY DIFFRACTION 2.5 Å
Chain IDs	A, B
Organism	Lactiplantibacillus plantarum WCFS1
Macromolecule	Putative lipase/esterase

Explore in 3D

3EFA: Entity 1	Download File View File

Crystal structure of putative N-acetyltransferase from Lactobacillus plantarum

Chang, C., Li, H., Cobb, G., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2008-09-23
Method	X-RAY DIFFRACTION 2.423 Å
Chain ID	A
Organism	Lactiplantibacillus plantarum WCFS1
Macromolecule	Putative Acetyltransferase

Explore in 3D

4BZW: Entity 1	Download File View File

Complete crystal structure of the carboxylesterase Cest-2923 (lp_2923) from Lactobacillus plantarum WCFS1

Benavente, R., Esteban-Torres, M., Acebron, I., delasRivas, B., Munoz, R., Alvarez, Y., Mancheno, J.M.

(2013) FEBS J 280: 6658

Released	2013-10-30
Method	X-RAY DIFFRACTION 2.148 Å
Chain IDs	A, B
Organism	Lactiplantibacillus plantarum WCFS1
Macromolecule	LIPASE/ESTERASE

Explore in 3D

4BZZ: Entity 1	Download File View File

Complete crystal structure of carboxylesterase Cest-2923 from Lactobacillus plantarum WCFS1

Benavente, R., Esteban-Torres, M., Acebron, I., de las Rivas, B., Munoz, R., Alvarez, Y., Mancheno, J.M.

(2013) FEBS J 280: 6658

Released	2013-10-30
Method	X-RAY DIFFRACTION 3 Å
Chain ID	A
Organism	Lactiplantibacillus plantarum WCFS1
Macromolecule	LIPASE/ESTERASE

Explore in 3D

4C01: Entity 1	Download File View File

Complete crystal structure of carboxylesterase Cest-2923 (lp_2923) from Lactobacillus plantarum WCFS1

Benavente, R., Esteban-Torres, M., Acebron, I., de las Rivas, B., Munoz, R., Alvarez, Y., Mancheno, J.M.

(2013) FEBS J 280: 6658

Released	2013-10-30
Method	X-RAY DIFFRACTION 2.3 Å
Chain IDs	A, B, C, D, E
Organism	Lactiplantibacillus plantarum WCFS1
Macromolecule	CEST-2923

Explore in 3D

4C87: Entity 1	Download File View File

Esterase LpEst1 from Lactobacillus plantarum WCFS1

Alvarez, Y., Esteban-Torres, M., Cortes-Cabrera, A., Gago, F., Acebron, I., Benavente, R., Mardo, K., de-las-Rivas, B., Munoz, R., Mancheno, J.M.

(2014) PLoS One 9: 92257

Released	2014-04-02
Method	X-RAY DIFFRACTION 2.65 Å
Chain IDs	A, B, C, D
Organism	Lactiplantibacillus plantarum WCFS1
Macromolecule	ESTERASE

Explore in 3D

4C88: Entity 1	Download File View File

Esterase LpEst1 from Lactobacillus plantarum: native structure

Alvarez, Y., Esteban-Torres, M., Cortes-Cabrera, A., Gago, F., Acebron, I., Benavente, R., Mardo, K., de-las-Rivas, B., Munoz, R., Mancheno, J.M.

(2014) PLoS One 9: 92257

Released	2014-04-02
Method	X-RAY DIFFRACTION 2.65 Å
Chain IDs	A, B, C, D
Organism	Lactiplantibacillus plantarum WCFS1
Macromolecule	ESTERASE

Explore in 3D

4C89: Entity 1	Download File View File

Crystal structure of carboxylesterase LpEst1 from Lactobacillus plantarum: high resolution model

Alvarez, Y., Esteban-Torres, M., Cortes-Cabrera, A., Gago, F., Acebron, I., Benavente, R., Mardo, K., de-las-Rivas, B., Munoz, R., Mancheno, J.M.

(2014) PLoS One 9: 92257

Released	2014-04-02
Method	X-RAY DIFFRACTION 2.05 Å
Chain IDs	A, B, C, D
Organism	Lactiplantibacillus plantarum WCFS1
Macromolecule	ESTERASE

Explore in 3D

4GZE: Entity 1	Download File View File

Crystal structure of 6-phospho-beta-glucosidase from Lactobacillus plantarum (apo form)

Michalska, K., Hatzos-Skintges, C., Bearden, J., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

(2013) Acta Crystallogr D Biol Crystallogr 69: 451-463

Released	2012-09-26
Method	X-RAY DIFFRACTION 2.31 Å
Chain IDs	A, B, C, D, E
Organism	Lactiplantibacillus plantarum WCFS1
Macromolecule	6-phospho-beta-glucosidase

Explore in 3D

5B1H: Entity 1	Download File View File

Crystal structure of cystathionine beta-synthase from Lactobacillus plantarum

Matoba, Y., Sugiyama, M.

(2017) Protein Sci 26: 763-783

Released	2016-12-07
Method	X-RAY DIFFRACTION 2.4 Å
Chain IDs	A, B, C, D
Organism	Lactiplantibacillus plantarum WCFS1
Macromolecule	Cystathionine beta-synthase

Explore in 3D

5B1I: Entity 1	Download File View File

Crystal structure of K42A mutant of cystathionine beta-synthase from Lactobacillus plantarum in a complex with L-methionine

Matoba, Y., Sugiyama, M.

(2017) Protein Sci 26: 763-783

Released	2016-12-07
Method	X-RAY DIFFRACTION 3.3 Å
Chain IDs	A, B, C, D, E
Organism	Lactiplantibacillus plantarum WCFS1
Macromolecule	Cystathionine beta-synthase

Explore in 3D

5UDQ: Entity 1	Download File View File

LarE, a sulfur transferase involved in synthesis of the cofactor for lactate racemase, apo form

Fellner, M., Desguin, B., Hausinger, R.P., Hu, J.

(2017) Proc Natl Acad Sci U S A 114: 9074-9079

Released	2017-08-23
Method	X-RAY DIFFRACTION 2.09 Å
Chain IDs	A, B, C, D, E
Organism	Lactiplantibacillus plantarum WCFS1
Macromolecule	Lactate racemization operon protein LarE

1 to 25 of 45 Structures

Page 1 of 2

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

All questions and comments will receive a response in a timely manner.

Use this form for questions about RCSB.org and RCSB PDB services.
Please attach a screenshot when reporting an issue, if possible.
To update/release your in-progress structure depositions:
access the OneDep Communication panel
For questions/corrections to specific PDB entries, including citation updates:
email deposit-help@mail.wwpdb.org

First Name

Last Name

Subject

Question, Comment, Feedback or Other

Attach File(s)
Use CTRL or Shift keys to select more than one file ( files max)

I agree to the Help Desk Privacy Policy

Optional: To help us learn more about our users, what is your:

Institution Type

Role

Main Research Interest

Thank you for providing your feedback! Someone will be in touch with you shortly. This window will automatically close in 5 seconds.

Apologies, our feedback server is currently unavailable and we are troubleshooting the issue. In the meantime, please copy and paste the below information into an email addressed to info@rcsb.org

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification