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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "IMMUNE SYSTEM/Transferase"

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Search Summary

This query matches 14 Structures.

Refinements

Structure Determination Methodology

experimental (14)

Scientific Name of Source Organism

	Homo sapiens (10)
	Mus musculus (10)
	synthetic construct (4)
	human gammaherpesvirus 4 (1)

Taxonomy

	Eukaryota (14)
	other sequences (4)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (13)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (14)
	DNA (4)

Refinement Resolution (Å)

	2.0 - 2.5 (2)
	2.5 - 3.0 (7)
	3.0 - 3.5 (5)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (4)
	2010 - 2014 (4)
	2020 - 2024 (5)

Enzyme Classification Name

	Transferases (14)
	Hydrolases (1)

Symmetry Type

	Asymmetric (9)
	Cyclic (5)

SCOP Classification

	All beta proteins (8)
	Artifacts (5)
	Small proteins (3)
	Alpha and beta proteins (a/b) (3)
	Alpha and beta proteins (a+b) (1)

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1 to 14 of 14 Structures

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1H15 \| pdb_00001h15	Download File View File

X-ray crystal structure of HLA-DRA10101/DRB50101 complexed with a peptide from Epstein Barr Virus DNA polymerase

Lang, H., Jacobsen, H., Ikemizu, S., Andersson, C., Harlos, K., Madsen, L., Hjorth, P., Sondergaard, L., Svejgaard, A., Wucherpfennig, K., Stuart, D.I., Bell, J.I., Jones, E.Y., Fugger, L.

(2002) Nat Immunol 3: 940

Released	2002-10-03
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens human gammaherpesvirus 4
Macromolecule	DNA POLYMERASE (protein) HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR ALPHA CHAIN (protein) HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, DR BETA 1 CHAIN (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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1YY9 \| pdb_00001yy9	Download File View File

Structure of the extracellular domain of the epidermal growth factor receptor in complex with the Fab fragment of cetuximab/Erbitux/IMC-C225

Li, S., Schmitz, K.R., Jeffrey, P.D., Wiltzius, J.J.W., Kussie, P., Ferguson, K.M.

(2005) Cancer Cell 7: 301-311

Released	2005-04-26
Method	X-RAY DIFFRACTION 2.605 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Cetuximab Fab Heavy chain (protein) Cetuximab Fab Light chain (protein) Epidermal Growth Factor Receptor (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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3B2U \| pdb_00003b2u	Download File View File

Crystal structure of isolated domain III of the extracellular region of the epidermal growth factor receptor in complex with the Fab fragment of IMC-11F8

Ferguson, K.M., Li, S., Kussie, P.

(2008) Structure 16: 216-227

Released	2008-02-19
Method	X-RAY DIFFRACTION 2.58 Å
Organisms	Homo sapiens
Macromolecule	Epidermal growth factor receptor (protein) IMC-11F8 Fab Heavy chain (protein) IMC-11F8 Fab Light chain (protein)
Unique Ligands	NAG, SO4
Unique branched monosaccharides	BMA, MAN, NAG

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3B2V \| pdb_00003b2v	Download File View File

Crystal structure of the extracellular region of the epidermal growth factor receptor in complex with the Fab fragment of IMC-11F8

Ferguson, K.M., Li, S., Kussie, P.

(2008) Structure 16: 216-227

Released	2008-02-19
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens
Macromolecule	Epidermal growth factor receptor (protein) IMC-11F8 FAB Heavy chain (protein) IMC-11F8 FAB Light chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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3C09 \| pdb_00003c09	Download File View File

Crystal structure the Fab fragment of matuzumab (Fab72000) in complex with domain III of the extracellular region of EGFR

Ferguson, K.M., Schmiedel, J., Knoechel, T.

(2008) Cancer Cell 13: 365-373

Released	2008-04-15
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	Epidermal growth factor receptor (protein) Matuzumab Fab Heavy chain (protein) Matuzumab Fab Light chain (protein)
Unique Ligands	BMA, MAN, NAG

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3S35 \| pdb_00003s35	Download File View File

Structural basis for the function of two anti-VEGF receptor antibodies

Franklin, M.C.

(2011) Structure 19: 1097-1107

Released	2011-08-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	6.64 Fab heavy chain (protein) 6.64 Fab light chain (protein) Vascular endothelial growth factor receptor 2 (protein)
Unique Ligands	CA, NAG
Unique branched monosaccharides	NAG

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3S36 \| pdb_00003s36	Download File View File

Structural basis for the function of two anti-VEGF receptor antibodies

Franklin, M.C.

(2011) Structure 19: 1097-1107

Released	2011-08-24
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	1121B heavy chain (protein) 1121B light chain (protein) Vascular endothelial growth factor receptor 2 (protein)

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3S37 \| pdb_00003s37	Download File View File

Structural basis for the function of two anti-VEGF receptor antibodies

Franklin, M.C.

(2011) Structure 19: 1097-1107

Released	2011-08-24
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	1121B Fab heavy chain (protein) 1121B Fab light chain (protein) Vascular endothelial growth factor receptor 2 (protein)

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4AG4 \| pdb_00004ag4	Download File View File

Crystal structure of a DDR1-Fab complex

Carafoli, F., Mayer, M.C., Shiraishi, K., Pecheva, M.A., Chan, L.Y., Nan, R., Leitinger, B., Hohenester, E.

(2012) Structure 20: 688

Released	2012-04-18
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	EPITHELIAL DISCOIDIN DOMAIN-CONTAINING RECEPTOR 1 (protein) MONOCLONAL ANTIBODY 3E3 HEAVY CHAIN (protein) MONOCLONAL ANTIBODY 3E3 LIGHT CHAIN (protein)
Unique Ligands	CA
Unique branched monosaccharides	NAG

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8EJ4 \| pdb_00008ej4	Download File View File

Cryo-EM structure of the active NLRP3 inflammasome disk

Hao, W., Le, X.

(2023) Nature 613: 595-600

Released	2022-12-14
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Homo sapiens
Macromolecule	NACHT, LRR and PYD domains-containing protein 3 (protein) Serine/threonine-protein kinase Nek7 (protein)
Unique Ligands	AGS, MG

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8GIO \| pdb_00008gio	Download File View File

Structure of Ternary Complex of mouse cGAS with dsDNA and Bound ATP: with 10mM Mg2+ and 0.1mM Mn2+

Wu, S., Sohn, J.

(2024) Nat Commun 15: 4012-4012

Released	2024-04-17
Method	X-RAY DIFFRACTION 2.67 Å
Organisms	Mus musculus synthetic construct
Macromolecule	Cyclic GMP-AMP synthase (protein) Palindromic DNA18 (nucleic acid)
Unique Ligands	ATP, MN, ZN

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8GIR \| pdb_00008gir	Download File View File

Structure of Ternary Complex of mouse cGAS with dsDNA and Bound ATP: with 10mM Mg2+ and 0.2mM Mn2+

Wu, S., Sohn, J.

(2024) Nat Commun 15: 4012-4012

Released	2024-04-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus synthetic construct
Macromolecule	Cyclic GMP-AMP synthase (protein) Palindromic DNA18 (nucleic acid)
Unique Ligands	ATP, MN, ZN

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8GIS \| pdb_00008gis	Download File View File

Structure of Ternary Complex of mouse cGAS with dsDNA and Bound ATP: with 10mM Mg2+ and 0.5mM Mn2+

Wu, S., Sohn, J.

(2024) Nat Commun 15: 4012-4012

Released	2024-04-17
Method	X-RAY DIFFRACTION 2.46 Å
Organisms	Mus musculus synthetic construct
Macromolecule	Cyclic GMP-AMP synthase (protein) Palindromic DNA18 (nucleic acid)
Unique Ligands	ATP, MN, ZN

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8GIT \| pdb_00008git	Download File View File

Structure of Ternary Complex of mouse cGAS with dsDNA and Bound ATP: with 10mM Mg2+ and 1mM Mn2+

Wu, S., Sohn, J.

(2024) Nat Commun 15: 4012-4012

Released	2024-04-17
Method	X-RAY DIFFRACTION 2.72 Å
Organisms	Mus musculus synthetic construct
Macromolecule	Cyclic GMP-AMP synthase (protein) Palindromic DNA18 (nucleic acid)
Unique Ligands	ATP, MN, ZN

1 to 14 of 14 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1H15 | pdb_00001h15

X-ray crystal structure of HLA-DRA10101/DRB50101 complexed with a peptide from Epstein Barr Virus DNA polymerase

1YY9 | pdb_00001yy9

Structure of the extracellular domain of the epidermal growth factor receptor in complex with the Fab fragment of cetuximab/Erbitux/IMC-C225

3B2U | pdb_00003b2u

Crystal structure of isolated domain III of the extracellular region of the epidermal growth factor receptor in complex with the Fab fragment of IMC-11F8

3B2V | pdb_00003b2v

Crystal structure of the extracellular region of the epidermal growth factor receptor in complex with the Fab fragment of IMC-11F8

3C09 | pdb_00003c09

Crystal structure the Fab fragment of matuzumab (Fab72000) in complex with domain III of the extracellular region of EGFR

3S35 | pdb_00003s35

Structural basis for the function of two anti-VEGF receptor antibodies

3S36 | pdb_00003s36

Structural basis for the function of two anti-VEGF receptor antibodies

3S37 | pdb_00003s37

Structural basis for the function of two anti-VEGF receptor antibodies

4AG4 | pdb_00004ag4

Crystal structure of a DDR1-Fab complex

8EJ4 | pdb_00008ej4

Cryo-EM structure of the active NLRP3 inflammasome disk

8GIO | pdb_00008gio

Structure of Ternary Complex of mouse cGAS with dsDNA and Bound ATP: with 10mM Mg2+ and 0.1mM Mn2+

8GIR | pdb_00008gir

Structure of Ternary Complex of mouse cGAS with dsDNA and Bound ATP: with 10mM Mg2+ and 0.2mM Mn2+

8GIS | pdb_00008gis

Structure of Ternary Complex of mouse cGAS with dsDNA and Bound ATP: with 10mM Mg2+ and 0.5mM Mn2+

8GIT | pdb_00008git

Structure of Ternary Complex of mouse cGAS with dsDNA and Bound ATP: with 10mM Mg2+ and 1mM Mn2+

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1H15 | pdb_00001h15

1YY9 | pdb_00001yy9

3B2U | pdb_00003b2u

3B2V | pdb_00003b2v

3C09 | pdb_00003c09

3S35 | pdb_00003s35

3S36 | pdb_00003s36

3S37 | pdb_00003s37

4AG4 | pdb_00004ag4

8EJ4 | pdb_00008ej4

8GIO | pdb_00008gio

8GIR | pdb_00008gir

8GIS | pdb_00008gis

8GIT | pdb_00008git