RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

232,418 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Structure Keywords HAS EXACT PHRASE "TRANSLOCASE"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 8 Structures.

Refinements

Structure Determination Methodology

experimental (8)

Scientific Name of Source Organism

	Aquifex aeolicus VF5 (7)
	Homo sapiens (1)

Taxonomy

	Bacteria (7)
	Eukaryota (1)

Experimental Method

	ELECTRON MICROSCOPY (6)
	X-RAY DIFFRACTION (2)

Polymer Entity Type

Protein (8)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	3.0 - 3.5 (2)
	3.5 - 4.0 (3)
	4.0 - 4.5 (1)

Release Date

	2015 - 2019 (1)
	2020 - 2024 (7)

Membrane Protein Annotation

	OPM (6)
	PDBTM (6)
	mpstruc (6)
	MemProtMD (1)

Symmetry Type

	Asymmetric (6)
	Cyclic (2)

SCOP Classification

All alpha proteins (1)

AllSelected

1 to 8 of 8 Structures

Page 1 of 1

Sort by

Explore in 3D

5Y7X	Download File View File

Human Peroxisome proliferator-activated receptor (PPAR) delta in complexed with a potent and selective agonist

Kim, H.L., Chin, J.W., Cho, S.J., Song, J.Y., Yoon, H.S., Bae, J.H.

(2024) Theranostics 14: 6088-6108

Released	2018-08-01
Method	X-RAY DIFFRACTION 1.699 Å
Organisms	Homo sapiens
Macromolecule	Peroxisome proliferator-activated receptor delta (protein)
Unique Ligands	8RR, CL, JZR, K, PGO

Explore in 3D

8DKU	Download File View File

CryoEM structure of the A. aeolicus WzmWzt transporter bound to the native O antigen

Spellmon, N., Muszynski, A., Vlach, J., Zimmer, J.

(2022) Nat Commun 13: 5226-5226

Released	2022-09-21
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	ABC transporter (protein) Transport permease protein (protein)
Unique branched monosaccharides	UBH, UBO, XXR

Explore in 3D

8DKY	Download File View File

Crystal structure of the Aquifex aeolicus Wzt Carbohydrate Binding Domain bound to 3-O-methyl-D-mannose

Spellmon, N., Zimmer, J.

(2022) Nat Commun 13: 5226-5226

Released	2022-09-21
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	ABC transporter (protein)
Unique Ligands	U90

Explore in 3D

8DL0	Download File View File

CryoEM structure of the nucleotide-free and open channel A.aeolicus WzmWzt transporter

Spellmon, N., Zimmer, J.

(2022) Nat Commun 13: 5226-5226

Released	2022-09-21
Method	ELECTRON MICROSCOPY 4.1 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	ABC transporter (protein) Transport permease protein (protein)

Explore in 3D

8DN8	Download File View File

CryoEM structure of the A. aeolicus WzmWzt transporter bound to 3-O-methyl-D-mannose

Spellmon, N., Zimmer, J.

(2022) Nat Commun 13: 5226-5226

Released	2022-09-21
Method	ELECTRON MICROSCOPY 3.7 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	ABC transporter (protein) Transport permease protein (protein)
Unique Ligands	U90

Explore in 3D

8DNC	Download File View File

CryoEM structure of the A. aeolicus WzmWzt transporter bound to the native O antigen and ADP

Spellmon, N., Muszynski, A., Vlach, J., Zimmer, J.

(2022) Nat Commun 13: 5226-5226

Released	2022-09-21
Method	ELECTRON MICROSCOPY 3.3 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	ABC transporter (protein) Transport permease protein (protein)
Unique Ligands	ADP, MG
Unique branched monosaccharides	UBH, UBO, XXR

Explore in 3D

8DNE	Download File View File

CryoEM structure of the A.aeolicus WzmWzt transporter bound to ATP

Spellmon, N., Zimmer, J.

(2022) Nat Commun 13: 5226-5226

Released	2022-09-21
Method	ELECTRON MICROSCOPY 3.5 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	ABC transporter (protein) Transport permease protein (protein)
Unique Ligands	ATP, MG

Explore in 3D

8DOU	Download File View File

CryoEM structure of the A. aeolicus WzmWzt transporter bound to ADP

Gorniak, I., Zimmer, J.

(2022) Nat Commun 13: 5226-5226

Released	2022-09-21
Method	ELECTRON MICROSCOPY 3.54 Å
Organisms	Aquifex aeolicus VF5
Macromolecule	ABC transporter (protein) Transport permease protein (protein)
Unique Ligands	ADP

1 to 8 of 8 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

All questions and comments will receive a response in a timely manner.

Use this form for questions about RCSB.org and RCSB PDB services.
Please attach a screenshot when reporting an issue, if possible.
To update/release your in-progress structure depositions:
access the OneDep Communication panel
For questions/corrections to specific PDB entries, including citation updates:
email deposit-help@mail.wwpdb.org

First Name

Last Name

Subject

Question, Comment, Feedback or Other

Attach File(s)
Use CTRL or Shift keys to select more than one file ( files max)

I agree to the Help Desk Privacy Policy

Optional: To help us learn more about our users, what is your:

Institution Type

Role

Main Research Interest

Thank you for providing your feedback! Someone will be in touch with you shortly. This window will automatically close in 5 seconds.

Apologies, our feedback server is currently unavailable and we are troubleshooting the issue. In the meantime, please copy and paste the below information into an email addressed to info@rcsb.org

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

SCOP Classification