Download MendeleyCrystal structures of ferricyanide-oxidized [Fe-S] clusters in Azotobacter vinelandii ferredoxin I.
Sridhar, V., Prasad, G.S., Burgess, B.K., Stout, C.D.(1998) J Biol Inorg Chem 3: 140-149
1AXQ
FERRICYANIDE OXIDIZED FDI
- PDB DOI: https://doi.org/10.2210/pdb1AXQ/pdb
- Classification: ELECTRON TRANSPORT
- Organism(s): Azotobacter vinelandii
- Expression System: Azotobacter vinelandii
- Mutation(s): No
- Deposited: 1997-10-17 Released: 1998-01-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Work: 0.255 (Depositor)
- R-Value Observed: 0.255 (Depositor)
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.4 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| FERREDOXIN | 106 | Azotobacter vinelandii | Mutation(s): 0 Gene Names: FDXA |  | |
UniProt | |||||
Find proteins for P00214 (Azotobacter vinelandii) Explore P00214 Go to UniProtKB: P00214 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00214 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SF4 Query on SF4 | B [auth A] | IRON/SULFUR CLUSTER Fe4 S4 LJBDFODJNLIPKO-UHFFFAOYSA-N |  | ||
| F3S Query on F3S | C [auth A] | FE3-S4 CLUSTER Fe3 S4 FCXHZBQOKRZXKS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Work: 0.255 (Depositor)
- R-Value Observed: 0.255 (Depositor)
Space Group: P 41 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 55.6 | α = 90 |
| b = 55.6 | β = 90 |
| c = 95.8 | γ = 90 |
| Software Name | Purpose |
|---|---|
| X-PLOR | model building |
| X-PLOR | refinement |
| XENGEN | data reduction |
| XENGEN | data scaling |
| X-PLOR | phasing |
Entry History
Deposition Data
- Released Date: 1998-01-28 Deposition Author(s): Stout, C.D.
Revision History (Full details and data files)
- Version 1.0: 1998-01-28
Type: Initial release - Version 1.1: 2008-03-24
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Version format compliance - Version 1.3: 2023-08-02
Changes: Database references, Derived calculations, Other, Refinement description - Version 1.4: 2024-05-22
Changes: Data collection
