Discovery of Thymidylate Synthase Inhibitors Using Flexible Docking and an Empirically Tuned Scoring Function
Welch, W., Sage, C.R., Stout, T.J., Klein, T., Ruppert, J., Stroud, R.M., Jain, A.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
THYMIDYLATE SYNTHASE | 265 | Escherichia coli | Mutation(s): 0 Gene Names: THYA EC: 2.1.1.45 | ![]() | |
UniProt | |||||
Find proteins for P0A884 (Escherichia coli (strain K12)) Explore P0A884 Go to UniProtKB: P0A884 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P0A884 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MTX Query on MTX | D [auth A], F [auth B] | METHOTREXATE C20 H22 N8 O5 FBOZXECLQNJBKD-ZDUSSCGKSA-N | |||
UMP Query on UMP | C [auth A], E [auth B] | 2'-DEOXYURIDINE 5'-MONOPHOSPHATE C9 H13 N2 O8 P JSRLJPSBLDHEIO-SHYZEUOFSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 127.34 | α = 90 |
b = 127.34 | β = 90 |
c = 68.06 | γ = 120 |
Software Name | Purpose |
---|---|
X-PLOR | model building |
X-PLOR | refinement |
DENZO | data reduction |
SCALEPACK | data scaling |
X-PLOR | phasing |