Preferred Conformation of C-Lactose at the Free and Peanut Lectin Bound States
Ravishankar, R., Surolia, A., Vijayan, M., Lim, S., Kishi, Y.(1998) J Am Chem Soc 120: 11297-11303
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation 3D Report Full Report
(1998) J Am Chem Soc 120: 11297-11303
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
PROTEIN (PEANUT LECTIN) | 232 | Arachis hypogaea | Mutation(s): 0 | ||
UniProt | |||||
Find proteins for P02872 (Arachis hypogaea) Explore P02872 Go to UniProtKB: P02872 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P02872 | ||||
Sequence AnnotationsExpand | |||||
|
Ligands 2 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MN Query on MN | J [auth A], L [auth B], N [auth C], P [auth D] | MANGANESE (II) ION Mn WAEMQWOKJMHJLA-UHFFFAOYSA-N | |||
CA Query on CA | I [auth A], K [auth B], M [auth C], O [auth D] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |
Entity ID: 2 | |||||
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ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900008 Query on PRD_900008 | E, F, H | alpha-lactose | Oligosaccharide / Nutrient |
Entity ID: 3 | |||||
---|---|---|---|---|---|
ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
PRD_900004 Query on PRD_900004 | G | beta-lactose | Oligosaccharide / Nutrient |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 129.121 | α = 90 |
b = 126.748 | β = 90 |
c = 76.9 | γ = 90 |
Software Name | Purpose |
---|---|
X-PLOR | model building |
X-PLOR | refinement |
XDS | data reduction |
XDS | data scaling |
X-PLOR | phasing |