1DVW

NMR structure of 18 residue peptide from merp protein

• PDB DOI: https://doi.org/10.2210/pdb1DVW/pdb

• Classification: METAL BINDING PROTEIN
• Organism(s): Shigella flexneri
• Mutation(s): No 


• Deposited: 2000-01-22 Released: 2003-12-23 
• Deposition Author(s): Veglia, G., Porcelli, F., De Silva, T.M., Prantner, A.M., Opella, S.J.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 50 
• Conformers Submitted: 10 
• Selection Criteria: structures with acceptable covalent geometry,structures with favorable non-bond energy,structures with the least restraint violations 

Literature

The Structure of the Metal-Binding Motif GMTCAAC Is Similar in an 18-Residue Linear Peptide and the Mercury Binding Protein MerP

Veglia, G., Porcelli, F., De Silva, T.M., Prantner, A.M., Opella, S.J.

(2000) J Am Chem Soc 122: 2389-2390

• DOI: https://doi.org/10.1021/ja992908z

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 2.01 kDa 
• Atom Count: 124 
• Modelled Residue Count: 18 
• Deposited Residue Count: 18 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
18 RESIDUE PEPTIDE FROM MERP PROTEIN	A	18	N/A	Mutation(s): 0
UniProt
Find proteins for P04129 (Shigella flexneri) Explore P04129  Go to UniProtKB:  P04129

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
HG	B [auth A]	MERCURY (II) ION Hg BQPIGGFYSBELGY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 50 
• Conformers Submitted: 10 
• Selection Criteria: structures with acceptable covalent geometry,structures with favorable non-bond energy,structures with the least restraint violations 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2003-12-23 
Deposition Author(s): Veglia, G., Porcelli, F., De Silva, T.M., Prantner, A.M., Opella, S.J.

Revision History  

• Version 1.0: 2003-12-23
  Type: Initial release
  
• Version 1.1: 2008-04-27
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-02-16
  Changes: Database references, Derived calculations
• Version 1.4: 2024-05-22
  Changes: Data collection