1LG7 | pdb_00001lg7

Crystal structure of Vesicular Stomatitis Virus Matrix Protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.96 Å
  • R-Value Free: 
    0.241 (Depositor), 0.206 (DCC) 
  • R-Value Work: 
    0.208 (Depositor), 0.210 (DCC) 
  • R-Value Observed: 
    0.218 (Depositor) 

wwPDB Validation 3D Report Full Report

Validation slider image for 1LG7

This is version 1.3 of the entry. See complete history

Literature

Crystal structure of vesicular stomatitis virus matrix protein.

Gaudier, M.Gaudin, Y.Knossow, M.

(2002) EMBO J 21: 2886-2892

  • DOI: https://doi.org/10.1093/emboj/cdf284
  • Primary Citation Related Structures: 
    1LG7

  • PubMed Abstract: 

    The vesicular stomatitis virus (VSV) matrix protein (M) interacts with cellular membranes, self-associates and plays a major role in virus assembly and budding. We present the crystallographic structure, determined at 1.96 A resolution, of a soluble thermolysin resistant core of VSV M. The fold is a new fold shared by the other vesiculovirus matrix proteins. The structure accounts for the loss of stability of M temperature-sensitive mutants deficient in budding, and reveals a flexible loop protruding from the globular core that is important for self-assembly. Membrane floatation shows that, together with the M lysine-rich N-terminal peptide, a second domain of the protein is involved in membrane binding. Indeed, the structure reveals a hydrophobic surface located close to the hydrophobic loop and surrounded by conserved basic residues that may constitute this domain. Lastly, comparison of the negative-stranded virus matrix proteins with retrovirus Gag proteins suggests that the flexible link between their major membrane binding domain and the rest of the structure is a common feature shared by these proteins involved in budding and virus assembly.


  • Organizational Affiliation
    • Laboratoire d'Enzymologie et Biochimie Structurales, CNRS, 91198 Gif sur Yvette Cedex, France.

Macromolecule Content 

  • Total Structure Weight: 21.01 kDa 
  • Atom Count: 1,472 
  • Modeled Residue Count: 164 
  • Deposited Residue Count: 182 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
VSV matrix protein182Vesicular stomatitis virusMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q8B0H2 (Vesicular stomatitis Indiana virus (strain 94GUB Central America))
Explore Q8B0H2 
Go to UniProtKB:  Q8B0H2
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8B0H2
Sequence Annotations
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Reference Sequence

Small Molecules

Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
CSO
Query on CSO
A
L-PEPTIDE LINKINGC3 H7 N O3 SCYS

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.96 Å
  • R-Value Free:  0.241 (Depositor), 0.206 (DCC) 
  • R-Value Work:  0.208 (Depositor), 0.210 (DCC) 
  • R-Value Observed: 0.218 (Depositor) 
Space Group: P 4 21 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 80.69α = 90
b = 80.69β = 90
c = 51.7γ = 90
Software Package:
Software NamePurpose
SHARPphasing
CNSrefinement
DENZOdata reduction
SCALEPACKdata scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2002-06-19
    Type: Initial release
  • Version 1.1: 2008-04-28
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Derived calculations, Version format compliance
  • Version 1.3: 2024-11-13
    Changes: Data collection, Database references, Derived calculations, Structure summary