1PVT | pdb_00001pvt

Crystal structure of sugar-phosphate aldolase from Thermotoga maritima

PDB DOI: https://doi.org/10.2210/pdb1PVT/pdb

Classification: LYASE
Organism(s): Thermotoga maritima
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2003-06-28 Released: 2003-09-23
Deposition Author(s): Osipiuk, J., Cuff, M.E., Korolev, O., Skarina, T., Savchenko, A., Edwards, A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.296 (Depositor), 0.248 (DCC)
R-Value Work:
0.257 (Depositor), 0.243 (DCC)
R-Value Observed:
0.257 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 1PVT

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of sugar-phosphate aldolase from Thermotoga maritima.

Osipiuk, J., Cuff, M.E., Korolev, O., Skarina, T., Savchenko, A., Edwards, A., Joachimiak, A.

To be published.

Macromolecule Content

Total Structure Weight: 27.36 kDa
Atom Count: 1,871
Modeled Residue Count: 232
Deposited Residue Count: 238
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
sugar-phosphate aldolase	A	238	Thermotoga maritima	Mutation(s): 8 Gene Names: TM1072
UniProt
Find proteins for Q9X0G1 (Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8)) Explore Q9X0G1 Go to UniProtKB: Q9X0G1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q9X0G1
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.296 (Depositor), 0.248 (DCC)
R-Value Work: 0.257 (Depositor), 0.243 (DCC)
R-Value Observed: 0.257 (Depositor)

Space Group: P 4 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 108.51	α = 90
b = 108.51	β = 90
c = 53.996	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
SCALEPACK	data scaling
SOLVE	phasing
RESOLVE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2003-09-23

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2003-09-23
Type: Initial release
Version 1.1: 2008-04-29
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Derived calculations, Version format compliance
Version 1.3: 2024-11-06
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.