1U6T

Crystal structure of the human SH3 binding glutamic-rich protein like

• PDB DOI: https://doi.org/10.2210/pdb1U6T/pdb

• Classification: PROTEIN BINDING, SIGNALING PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2004-08-01 Released: 2005-08-09 
• Deposition Author(s): Yin, L., Xiang, Y., Yang, N., Zhu, D.-Y., Huang, R.-H., Wang, D.-C.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 
  0.212 (Depositor), 0.210 (DCC) 
• R-Value Work: 
  0.168 (Depositor), 0.160 (DCC) 
• R-Value Observed: 
  0.168 (Depositor) 

Literature

Crystal structure of human SH3BGRL protein: the first structure of the human SH3BGR family representing a novel class of thioredoxin fold proteins

Yin, L., Xiang, Y., Zhu, D.-Y., Yan, N., Huang, R.-H., Zhang, Y., Wang, D.-C.

(2005) Proteins 61: 213-216

• PubMed: 16080146 
• DOI: https://doi.org/10.1002/prot.20523
• Primary Citation of Related Structures:  
  1U6T

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Organizational Affiliation: 

Center for Structural and Molecular Biology, Institute of Biophysics, Chinese Academy of Sciences, Beijing, People's Republic of China.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 13.92 kDa 
• Atom Count: 1,183 
• Modelled Residue Count: 121 
• Deposited Residue Count: 121 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
SH3 domain-binding glutamic acid-rich-like protein	A	121	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for O75368 (Homo sapiens) Explore O75368  Go to UniProtKB:  O75368
PHAROS:  O75368 GTEx:  ENSG00000131171

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
CIT	B [auth A]	CITRIC ACID C6 H8 O7 KRKNYBCHXYNGOX-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free:  0.212 (Depositor), 0.210 (DCC) 
• R-Value Work:  0.168 (Depositor), 0.160 (DCC) 
• R-Value Observed: 0.168 (Depositor) 

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 28.886	α = 90
b = 34.815	β = 90
c = 97.965	γ = 90

Software Package:

Software Name	Purpose
MOSFLM	data reduction
SCALA	data scaling
SHELXD	phasing
CNS	refinement
CCP4	data scaling
SHARP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2005-08-09 
Deposition Author(s): Yin, L., Xiang, Y., Yang, N., Zhu, D.-Y., Huang, R.-H., Wang, D.-C.

Revision History  

• Version 1.0: 2005-08-09
  Type: Initial release
  
• Version 1.1: 2008-03-14
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2024-03-13
  Changes: Data collection, Database references, Derived calculations