1UFA

Crystal structure of TT1467 from Thermus thermophilus HB8

• PDB DOI: https://doi.org/10.2210/pdb1UFA/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Thermus thermophilus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2003-05-28 Released: 2003-11-28 
• Deposition Author(s): Idaka, M., Terada, T., Murayama, K., Yamaguchi, H., Nureki, O., Ishitani, R., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free: 
  0.238 (Depositor) 
• R-Value Work: 
  0.187 (Depositor) 
• R-Value Observed: 
  0.187 (Depositor) 

Literature

Crystal structure of TT1467 from Thermus thermophilus HB8

Idaka, M., Terada, T., Murayama, K., Yamaguchi, H., Nureki, O., Ishitani, R., Kuramitsu, S., Shirouzu, M., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 59.63 kDa 
• Atom Count: 4,412 
• Modelled Residue Count: 509 
• Deposited Residue Count: 520 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
TT1467 protein	A	520	Thermus thermophilus	Mutation(s): 0  EC: 2.4.1.18
UniProt
Find proteins for Q5SH28 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SH28  Go to UniProtKB:  Q5SH28

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.20 Å
• R-Value Free:  0.238 (Depositor) 
• R-Value Work:  0.187 (Depositor) 
• R-Value Observed: 0.187 (Depositor) 

Space Group: P 4₂ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 119.376	α = 90
b = 119.376	β = 90
c = 73.898	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
DENZO	data reduction
SCALEPACK	data scaling
SHARP	phasing
autoSHARP	phasing
CCP4	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2003-11-28 
Deposition Author(s): Idaka, M., Terada, T., Murayama, K., Yamaguchi, H., Nureki, O., Ishitani, R., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2003-11-28
  Type: Initial release
  
• Version 1.1: 2008-04-27
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2017-10-04
  Changes: Refinement description
• Version 1.4: 2023-12-27
  Changes: Data collection, Database references, Derived calculations
• Version 1.5: 2024-11-20
  Changes: Structure summary