1VJH

Crystal structure of gene product of At1g24000 from Arabidopsis thaliana

• PDB DOI: https://doi.org/10.2210/pdb1VJH/pdb

• Classification: PLANT PROTEIN
• Organism(s): Arabidopsis thaliana
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2004-02-20 Released: 2004-03-16 
• Deposition Author(s): Wesenberg, G.E., Smith, D.W., Phillips Jr., G.N., Johnson, K.A., Bingman, C.A., Center for Eukaryotic Structural Genomics (CESG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 0.239 
• R-Value Work: 0.186 

Re-refinement Note

A newer entry is available that reflects an alternative modeling of the original data: 2Q3Q

Literature

1H, 15N and 13C resonance assignments of the putative Bet v 1 family protein At1g24000.1 from Arabidopsis thaliana.

Song, J., Zhao, Q., Lee, M.S., Markley, J.L.

(2005) J Biomol NMR 32: 335-335

• PubMed: 16211487 
• DOI: https://doi.org/10.1007/s10858-005-8205-4
• Primary Citation of Related Structures:  
  1VJH

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 27.75 kDa 
• Atom Count: 2,015 
• Modelled Residue Count: 240 
• Deposited Residue Count: 244 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bet v I allergen family	A, B	122	Arabidopsis thaliana	Mutation(s): 0  Gene Names: At1g24000
UniProt
Find proteins for P0C0B0 (Arabidopsis thaliana) Explore P0C0B0  Go to UniProtKB:  P0C0B0

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.10 Å
• R-Value Free: 0.239 
• R-Value Work: 0.186 
• Space Group: P 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 45.681	α = 90
b = 34.261	β = 90.008
c = 78.597	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
SOLVE	phasing
RESOLVE	phasing
DENZO	data reduction
SCALEPACK	data scaling
PDB_EXTRACT	data extraction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2004-03-16 
Deposition Author(s): Wesenberg, G.E., Smith, D.W., Phillips Jr., G.N., Johnson, K.A., Bingman, C.A., Center for Eukaryotic Structural Genomics (CESG)

Revision History  

• Version 1.0: 2004-03-16
  Type: Initial release
  
• Version 1.1: 2008-02-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2017-10-04
  Changes: Refinement description
• Version 1.4: 2023-12-27
  Changes: Data collection, Database references, Derived calculations
• Version 1.5: 2024-11-13
  Changes: Structure summary