1WSC | pdb_00001wsc

Crystal structure of ST0229, function unknown protein from Sulfolobus tokodaii

PDB DOI: https://doi.org/10.2210/pdb1WSC/pdb

Classification: Structural genomics, unknown function
Organism(s): Sulfurisphaera tokodaii
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2004-11-05 Released: 2005-11-08
Deposition Author(s): Murayama, T., Tanaka, Y., Sasaki, T., Yasutake, Y., Yao, M., Tsumoto, K., Tanaka, I., Kumagai, I.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.45 Å
R-Value Free:
0.278 (Depositor)
R-Value Work:
0.217 (Depositor)
R-Value Observed:
0.217 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 1WSC

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of ST0229, function unknown protein from Sulfolobus tokodaii

Murayama, T., Tanaka, Y., Sasaki, T., Yasutake, Y., Yao, M., Tsumoto, K., Tanaka, I., Kumagai, I.

To be published.

Macromolecule Content

Total Structure Weight: 51.9 kDa
Atom Count: 3,601
Modeled Residue Count: 439
Deposited Residue Count: 460
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hypothetical protein ST0229	A, B	230	Sulfurisphaera tokodaii	Mutation(s): 2
UniProt
Find proteins for Q976G0 (Sulfurisphaera tokodaii (strain DSM 16993 / JCM 10545 / NBRC 100140 / 7)) Explore Q976G0 Go to UniProtKB: Q976G0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q976G0
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.45 Å
R-Value Free: 0.278 (Depositor)
R-Value Work: 0.217 (Depositor)
R-Value Observed: 0.217 (Depositor)

Space Group: C 2 2 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 69.863	α = 90
b = 113.657	β = 90
c = 111.623	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
CCP4	data scaling
SOLVE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2005-11-08

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2005-11-08
Type: Initial release
Version 1.1: 2008-04-30
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Version format compliance
Version 1.3: 2024-11-13
Changes: Data collection, Database references, Derived calculations, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.