27EM | pdb_000027em

Cryo_EM structure of PACAP27_PAC1R_Beta_arrestin 1 complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation 3D Report Full Report

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Literature

Structural basis of beta-arrestin coupling and transducer selectivity in PAC1R.

Zhang, M.Li, X.Yuan, Q.N.Hu, W.Xu, H.E.Zhao, L.H.

(2026) Acta Pharmacol Sin 

  • DOI: https://doi.org/10.1038/s41401-026-01924-4
  • Primary Citation Related Structures: 
    27EM

  • PubMed Abstract: 

    The pituitary adenylate cyclase-activating polypeptide receptor (PAC1R) is a class B G protein-coupled receptor (GPCR) that engages both G proteins and β-arrestins to mediate diverse signaling responses, yet how PAC1R adopts distinct intracellular conformations to achieve this transducer selectivity remains poorly understood. Here, we report the cryo-electron microscopy structure of PAC1R in complex with β-arrestin 1 (βarr1), revealing a core-engaged conformation. Comparison with the G s -bound PAC1R structure shows that βarr1 engagement is associated with remodeling of the intracellular transmembrane bundle, including TM5 reorientation and inward movement of TM6, resulting in a receptor core geometry distinct from that of the G protein-bound state. Comparison with the βarr1-bound parathyroid hormone receptor 1 (PTH1R) structure further reveals both conserved and receptor-specific features of βarr1 engagement. Although outward displacement of the TM5 cytoplasmic end is observed in both PAC1R-βarr1 and PTH1R-βarr1 complexes, its specific direction and the resulting TM5-TM6 rearrangements differ between receptors, correlating with distinct βarr1 finger loop orientations within the receptor core. Together, these findings suggest that β-arrestin core engagement by class B GPCRs is accompanied by receptor-specific intracellular remodeling that may contribute to transducer selectivity in PAC1R.


  • Organizational Affiliation
    • State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, China.

Macromolecule Content 

  • Total Structure Weight: 146.51 kDa 
  • Atom Count: 9,095 
  • Modeled Residue Count: 1,150 
  • Deposited Residue Count: 1,307 
  • Unique protein chains: 5

Macromolecules

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Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Beta-arrestin-1A [auth B]391Homo sapiensMutation(s): 0 
Gene Names: ARRB1ARR1
UniProt & NIH Common Fund Data Resources
Find proteins for P49407 (Homo sapiens)
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Go to UniProtKB:  P49407
PHAROS:  P49407
GTEx:  ENSG00000137486 
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UniProt GroupP49407
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Reference Sequence
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Entity ID: 2
MoleculeChains  Sequence LengthOrganismDetailsImage
Fab30HB [auth C]230synthetic constructMutation(s): 0 
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Reference Sequence
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Entity ID: 3
MoleculeChains  Sequence LengthOrganismDetailsImage
Fab30LC [auth E]215synthetic constructMutation(s): 0 
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Reference Sequence
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Entity ID: 4
MoleculeChains  Sequence LengthOrganismDetailsImage
Pituitary adenylate cyclase-activating polypeptide 27D [auth P]28Homo sapiensMutation(s): 1 
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Find proteins for P18509 (Homo sapiens)
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PHAROS:  P18509
GTEx:  ENSG00000141433 
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UniProt GroupP18509
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Reference Sequence
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Entity ID: 5
MoleculeChains  Sequence LengthOrganismDetailsImage
Pituitary adenylate cyclase-activating polypeptide type I receptorE [auth R]443Homo sapiensMutation(s): 0 
Gene Names: ADCYAP1R1
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Find proteins for P41586 (Homo sapiens)
Explore P41586 
Go to UniProtKB:  P41586
PHAROS:  P41586
GTEx:  ENSG00000078549 
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Reference Sequence

Small Molecules

Modified Residues  2 Unique
IDChains TypeFormula2D DiagramParent
SEP
Query on SEP
E [auth R]L-PEPTIDE LINKINGC3 H8 N O6 PSER
TPO
Query on TPO
E [auth R]L-PEPTIDE LINKINGC4 H10 N O6 PTHR

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.00 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.20.1_4487
RECONSTRUCTIONcryoSPARC

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China--

Revision History  (Full details and data files)

  • Version 1.0: 2026-09-16
    Type: Initial release