2ABI

Crystal structure of the human mineralocorticoid receptor ligand-binding domain bound to deoxycorticosterone

• PDB DOI: https://doi.org/10.2210/pdb2ABI/pdb

• Classification: TRANSCRIPTION REGULATOR
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2005-07-15 Released: 2006-07-25 
• Deposition Author(s): Huyet, J., Pinon, G.-M., Rochel, M., Mayer, C., Rafestin-Oblin, M.-E., Fagart, J.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.33 Å
• R-Value Free: 0.264 
• R-Value Work: 0.207 
• R-Value Observed: 0.207 

Starting Model: experimental

Literature

Crystal structure of the human mineralocorticoid receptor ligand-binding domain bound to deoxycorticosterone

Huyet, J., Pinon, G.-M., Rochel, M., Mayer, C., Rafestin-Oblin, M.-E., Fagart, J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 3 assigned by authors.

Macromolecule Content

• Total Structure Weight: 90.02 kDa 
• Atom Count: 6,075 
• Modelled Residue Count: 698 
• Deposited Residue Count: 768 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Mineralocorticoid receptor	A, B, C	256	Homo sapiens	Mutation(s): 1  Gene Names: NR3C2, MCR, MLR
UniProt & NIH Common Fund Data Resources
Find proteins for P08235 (Homo sapiens) Explore P08235  Go to UniProtKB:  P08235
PHAROS:  P08235 GTEx:  ENSG00000151623

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
1CA	D [auth A], E [auth B], F [auth C]	DESOXYCORTICOSTERONE C21 H30 O3 ZESRJSPZRDMNHY-YFWFAHHUSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.33 Å
• R-Value Free: 0.264 
• R-Value Work: 0.207 
• R-Value Observed: 0.207 
• Space Group: P 3₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 119.77	α = 90
b = 119.77	β = 90
c = 41.5	γ = 120

Software Package:

Software Name	Purpose
XDS	data scaling
XDS	data reduction
BEAST	model building
CNS	refinement
BEAST	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-07-25 
Deposition Author(s): Huyet, J., Pinon, G.-M., Rochel, M., Mayer, C., Rafestin-Oblin, M.-E., Fagart, J.

Revision History  

• Version 1.0: 2006-07-25
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2021-11-10
  Changes: Database references, Derived calculations
• Version 1.4: 2023-10-25
  Changes: Data collection, Refinement description