2B7G | pdb_00002b7g

Structure of the Smaug Recognition RNA Element

• PDB DOI: https://doi.org/10.2210/pdb2B7G/pdb
• NAKB: 2B7G

• Classification: RNA
• Mutation(s): No 


• Deposited: 2005-10-04 Released: 2006-01-24 
• Deposition Author(s): Johnson, P.E., Donaldson, L.W.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 10 
• Selection Criteria: structures with the least restraint violations 

Literature

RNA recognition by the Vts1p SAM domain

Johnson, P.E., Donaldson, L.W.

(2006) Nat Struct Mol Biol 13: 177-178

• PubMed: 16429155 
• DOI: https://doi.org/10.1038/nsmb1039
• Primary Citation Related Structures: 
  2B6G, 2B7G


• PubMed Abstract: 
  

  The putative yeast post-transcriptional regulator Vts1p and its related protein Smaug, from Drosophila melanogaster, each use a sterile alpha motif (SAM) domain to bind an RNA hairpin termed the Smaug recognition element (SRE). Here, we present the NMR structures of the Vts1p-SRE complex and the free SRE. Structural highlights include the direct recognition of a guanine base and the formation or stabilization of a base pair in the SRE loop.

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Organizational Affiliation: 
• Department of Chemistry, York University, 4700 Keele Street, Toronto, Ontario, Canada, M3J 1P3. [e-mail] <[e-mail]>

Biological Assembly 1  

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 6.09 kDa 
• Atom Count: 402 
• Modeled Residue Count: 19 
• Deposited Residue Count: 19 
• Unique nucleic acid chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Length	Organism	Image
5'-R(*GP*GP*AP*GP*GP*CP*UP*CP*UP*GP*GP*CP*AP*GP*CP*UP*UP*UP*C)-3'	A	19	N/A

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 10 
• Selection Criteria: structures with the least restraint violations 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-01-24 
Deposition Author(s): Johnson, P.E., Donaldson, L.W.

Revision History  

• Version 1.0: 2006-01-24
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-03-09
  Changes: Data collection, Database references, Derived calculations
• Version 1.4: 2024-05-22
  Changes: Data collection