2CJJ

Crystal Structure of the MYB domain of the RAD transcription factor from Antirrhinum majus

• PDB DOI: https://doi.org/10.2210/pdb2CJJ/pdb

• Classification: DNA BINDING PROTEIN
• Organism(s): Antirrhinum majus
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): No 


• Deposited: 2006-04-04 Released: 2006-10-25 
• Deposition Author(s): Stevenson, C.E.M., Burton, N., Costa, M.M., Nath, U., Dixon, R.A., Coen, E.S., Lawson, D.M.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free: 
  0.250 (Depositor), 0.260 (DCC) 
• R-Value Work: 
  0.215 (Depositor), 0.220 (DCC) 
• R-Value Observed: 
  0.216 (Depositor) 

Literature

Crystal Structure of the Myb Domain of the Rad Transcription Factor from Antirrhinum Majus.

Stevenson, C.E.M., Burton, N., Costa, M.M., Nath, U., Dixon, R.A., Coen, E.S., Lawson, D.M.

(2006) Proteins 65: 1041

• PubMed: 17044043 
• DOI: https://doi.org/10.1002/prot.21136
• Primary Citation of Related Structures:  
  2CJJ

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Organizational Affiliation: 

Department of Biological Chemistry, John Innes Centre, Norwich NR4 7UH, United Kingdom.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PQS (software)

Macromolecule Content

• Total Structure Weight: 10.8 kDa 
• Atom Count: 561 
• Modelled Residue Count: 63 
• Deposited Residue Count: 93 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RADIALIS	A	93	Antirrhinum majus	Mutation(s): 0
UniProt
Find proteins for Q58FS3 (Antirrhinum majus) Explore Q58FS3  Go to UniProtKB:  Q58FS3

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.90 Å
• R-Value Free:  0.250 (Depositor), 0.260 (DCC) 
• R-Value Work:  0.215 (Depositor), 0.220 (DCC) 
• R-Value Observed: 0.216 (Depositor) 

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 44.594	α = 90
b = 44.594	β = 90
c = 71.89	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
DENZO	data reduction
SCALEPACK	data scaling
SHELXCD	phasing
SHELXD	phasing
SHELXE	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-10-25 
Deposition Author(s): Stevenson, C.E.M., Burton, N., Costa, M.M., Nath, U., Dixon, R.A., Coen, E.S., Lawson, D.M.

Revision History  

• Version 1.0: 2006-10-25
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Advisory, Version format compliance
• Version 1.2: 2017-07-12
  Changes: Data collection
• Version 1.3: 2024-05-08
  Changes: Data collection, Database references, Other