2D9G

Solution structure of the zf-RanBP domain of YY1-associated factor 2

• PDB DOI: https://doi.org/10.2210/pdb2D9G/pdb

• Classification: TRANSCRIPTION
• Organism(s): Homo sapiens
• Mutation(s): No 


• Deposited: 2005-12-09 Released: 2006-06-09 
• Deposition Author(s): Zhang, H.P., Izumi, K., Yoshida, M., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function,structures with the lowest energy,structures with the least restraint violations 

Literature

Solution structure of the zf-RanBP domain of YY1-associated factor 2

Zhang, H.P., Izumi, K., Yoshida, M., Hayashi, F., Yokoyama, S.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 5.66 kDa 
• Atom Count: 386 
• Modelled Residue Count: 53 
• Deposited Residue Count: 53 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
YY1-associated factor 2	A	53	Homo sapiens	Mutation(s): 0  Gene Names: YAF2
UniProt & NIH Common Fund Data Resources
Find proteins for Q8IY57 (Homo sapiens) Explore Q8IY57  Go to UniProtKB:  Q8IY57
PHAROS:  Q8IY57 GTEx:  ENSG00000015153

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ZN	B [auth A]	ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: target function,structures with the lowest energy,structures with the least restraint violations 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-06-09 
Deposition Author(s): Zhang, H.P., Izumi, K., Yoshida, M., Hayashi, F., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Revision History  

• Version 1.0: 2006-06-09
  Type: Initial release
  
• Version 1.1: 2008-04-30
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-03-09
  Changes: Data collection, Database references, Derived calculations
• Version 1.4: 2024-05-29
  Changes: Data collection