Crystal structure of the GTP-binding protein YchF in complexed with GDP
Kukimoto-Niino, M., Murayama, K., Shirouzu, M., Kuramitsu, S., Yokoyama, S.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
GTP-binding protein | 368 | Thermus thermophilus HB8 | Mutation(s): 2 | ![]() | |
UniProt | |||||
Find proteins for Q5SJ29 (Thermus thermophilus (strain ATCC 27634 / DSM 579 / HB8)) Explore Q5SJ29 Go to UniProtKB: Q5SJ29 | |||||
Entity Groups | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q5SJ29 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GDP Query on GDP | B [auth A] | GUANOSINE-5'-DIPHOSPHATE C10 H15 N5 O11 P2 QGWNDRXFNXRZMB-UUOKFMHZSA-N | |||
FMT Query on FMT | C [auth A], D [auth A], E [auth A] | FORMIC ACID C H2 O2 BDAGIHXWWSANSR-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
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a = 60.384 | α = 90 |
b = 133.169 | β = 90 |
c = 46.432 | γ = 90 |
Software Name | Purpose |
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CNS | refinement |
HKL-2000 | data reduction |
SCALEPACK | data scaling |
SOLVE | phasing |